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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gattatatgttatttattattaatttaatgtatttgatttttaacttgctatgccttatcattgcttttattaaccgatttgtgtccctaatcaatgcagTTTAAATTGGCAACACCAGCTTTGCAAAAACCCTAGGCCAAATCCGGATATAAAGACTTTATTCACTGACCACACATGTACACCTCCTAATGGTCCTCTA

Basic information

species Glycine max
transcript GLYMA19G41840.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G41840.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G316967_T01 (Zea mays), 3'ss of exon 4
gattatatgttatttattattaatttaatgtatttgatttttaacttgctatgccttatcattgcttttattaaccgatttgtgtccctaatcaatgcagTTTAAATTGGCAACACCAGCTTTGCAAAAACCCTAGGCCAAATCCGGATATAAAGACTTTATTCACTGACCACACATGTACACCTCCTAATGGTCCTCTA
| ||  | || || || |  |   ||| | ||   ||| ||    || |  | |  |||  ||  | |     || |||||    ||| |||   ||||| || |||||||| || |||||||| || |||||| | |||||||| ||||| || ||||||||||| ||||| |||||| | || || |||||  |||  
gtttgaaagtaatctaatgctg--ttactttaacggatattctgtttccattccaatatttttagtgt----gactgatttcccccccaaat--gtgcagCTTGAATTGGCAGCATCAGCTTTGTAAGAACCCTCGTCCAAATCCAGATATCAAAACTTTATTCACCGACCATACATGTTCTCCACCCAATGGAGCTCGT

upper sequence: GLYMA19G41840.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G416836_T01 (Zea mays), 3'ss of exon 3
--gattatatgttatttattattaatttaatgtatttgatttttaacttgctatgccttatcattgcttttattaaccgatttgtgtccctaatcaatgcagTTTAAATTGGCAACACCAGCTTTGCAAAAACCCTAGGCCAAATCCGGATATAAAGACTTTATTCACTGACCACACATGTACACCTCCTAATGGTCCTCTA
  | |   |     | |   |      |  |  | |  |  ||    || |  | | |||  |||  | || | |      |    |||| ||    ||||| || |||||||| || || | ||| || || ||| | |||||||| ||||| || ||||||||||||||||| ||||||||    || |||||  |||  
cagctagcaccccctctcgcacggccctgtt--actgcacattctgttttcgttccgttacaatttttattgtgattatgatgccctccccaaaatgtgcagCTTGAATTGGCAGCATCAACATTGTAAGAATCCTCGTCCAAATCCAGATATCAAAACTTTATTCACTGACCATACATGTACTTTACCCAATGGAGCTCCT

upper sequence: GLYMA19G41840.1 (Glycine max), 3'ss of exon 4
lower sequence: AT5G27030.1 (Arabidopsis thaliana), 3'ss of exon 4
gattatatgttatttattattaatttaatg--tatttgatttttaacttgctatgccttatcattgcttttattaaccgatt---tgtgtccctaatcaat-gcagTTTAAATTGGCAACACCAGCTTTGCAAAAACCCTAGGCCAAATCCGGATATAAAGACTTTATTCACTGACCACACATGTACACCTCCTAATGGTCCTCTA
     | ||||  || ||  |    | |||   |||   | | |  |     | |  |           || ||    ||||   ||||    |  ||  | ||||  | |||||||| |||||| | ||||| || ||||||||||| || ||||| || ||| ||||||| |||||||| || |||| ||| ||||||||||| 
----gtgtgtttcttttttctttcctcatgaccattctgtatgttgcagatgaggtttggatgacttcgttgttggatgattcattgtgcatatgttctcttgcagCCTCAATTGGCAGCACCAGTTGTGCAAGAATCCTAGGCCAAACCCAGATATTAAAACTCTATTCACAGACCACACTTGCACACTTCCGAATGGTCCTCTC

upper sequence: GLYMA19G41840.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv14s0060g01680.t01 (Vitis vinifera), 3'ss of exon 4
gattatatgttatttattattaatttaatgtatttg-atttttaacttgctatgccttatcattgcttttattaaccgatttgtgtccctaatcaatgcagTTTAAATTGGCAACACCAGCTTTGCAAAAACCCTAGGCCAAATCCGGATATAAAGACTTTATTCACTGACCACACATGTACACCTCCTAATGGTCCTCTA
 | | ||  |    |  | |   ||  | | ||    |   | ||     |||| | | |  |  |      ||       || |||| |  |  |||||||||||||||||| |||||||||||||| |||||  |||||||||| || || ||||| |||||||| ||||| |||||| | ||| | |||||  |||| 
-actttacatatactgctgtgtgttacacgcatacacacactcaaacatatatgacctgttgtatcaaactctagtatgaatgagtccatggtgtatgcagTTTAAATTGGCAGCACCAGCTTTGCAAGAACCCCCGGCCAAATCCAGACATTAAGACATTATTCACAGACCATACATGTGCCCCTTCAAATGGGGCTCTT

upper sequence: GLYMA19G41840.1 (Glycine max), 3'ss of exon 4
lower sequence: PP1S316_34V6.1 (Physcomitrella patens), 3'ss of exon 4
-------------------------------------------------------------------gattatatgttatttattat-taatttaatgtatttgatttttaacttgctat--gccttatcattgcttttattaaccgatttgtgtcc-ctaatcaat--gcagTTTAAATTGGCAACACCAGCTTTGCAAAAACCCTAGGCCAAATCCGGATATAAAGACTTTATTCACTGACCACACATGTACACCTCCTAATGGTCCTCTA
                                                                     ||     || ||  |    |     |  | | ||  | |||  |||   ||   ||  |  ||||   | |   |    | ||||| |  | ||| ||  ||||| | |||||||| || ||||||||||||||||| ||||| ||||| || || |||||  | |||| ||| ||||||||    |||||||||||  ||| |
gtaataaatagcccatgtgttctaccttgagctcctcaagattatccaggtggtggcttctgcttgtagttgagcattgttggtggcatgcaacaccgcactttgtattttccttcgaattcaccagagtattgacatgaaggatttttatgtgttcgtttatctatttgcagTCTCAATTGGCAGCATCAGCTTTGCAAAAACCCAAGGCCGAATCCTGACATTAAGACACTCTTCATTGATCACACATGCGGGCCTCCTAATGGGGCTCGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgctatgccttatcattgcttttattaaccgatttgtgtccctaatcaatgcagTTTAAATTGGCAACACCAGCTTTGCAAAAACCCTAGGCCAAATCCGGATATAAAGACTTTATTCACTGACCACACATGTACACCTCCTAATGGTCCTCTA
               attgcttttattaa  TA-rich tract