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gttagtttcttcttcttcttctttttagataaatgaataagtggatgcgtttgtgtatagtgtacttgttttatactagagtttcattcaatgcatgagtgctatattgcaagaacatgaatacagaattgcagatttatttcttttaaatatttacataagtcagagttgctttaatttcgaaaacaatgtgcagGAGTTTTTCGATCCAGAAATAAAGAAAATGAAAATCAAGAACTGCTACTTCCCATTGTTTGTATCTCCTGGAGTTCTGCAAAAGGAGAAGGACCACGTTG
species | Glycine max |
transcript | GLYMA19G40930.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTTGCTATATTCTGAGGCCTTGGTCAATGGCAATATGGGAGATCATGCAA GAGTTTTTCGATCCAGAAATAAAGAAAATGAAAATCAAGAACTGCTACTTCEST: gi|207838718|gb|GD810422.1|GD810422
genomic: GTTGCTATATTCTGAGGCCTTGGTCAATGGCAATATGGGAGATCATGCAAgttagtttct ... caatgtgcagGAGTTTTTCGATCCAGAAATAAAGAAAATGAAAATCAAGAACTGCTACTTC
EST: GCTAATAATTCTTGAGGCCTTGGTCAATGGCAATATGAGAGATCATGCAA GAGTTTTTCGATCCAGAAATAAAGAAAATGAAAATCAAGAACTGCTACTTCEST: gi|208308087|gb|GE105483.1|GE105483
genomic: GCT-AT-ATTC-TGAGGCCTTGGTCAATGGCAATATGGGAGATCATGCAAgttagtttct ... caatgtgcagGAGTTTTTCGATCCAGAAATAAAGAAAATGAAAATCAAGAACTGCTACTTC
EST: GTTGCTATATTCTGAGGCCTTGGTCAACGGCAATATGGGAGATCATGCAA GAGTTTTTCGATCCAGAAATAAAGAAAATGAAAATCAAGAACTGCTACTTCEST: gi|7591393|gb|AW707127.1|AW707127
genomic: GTTGCTATATTCTGAGGCCTTGGTCAATGGCAATATGGGAGATCATGCAAgttagtttct ... caatgtgcagGAGTTTTTCGATCCAGAAATAAAGAAAATGAAAATCAAGAACTGCTACTTC
EST: GTTGCTATATTCTGAGGCCTTGGTCAATGGCAATATGGGAGATCATGCAA GAGTTTTTCGATCCAGAAATAAAGAAAATGAAAATCAAGAACTGCTACTTCEST: gi|209700498|gb|BW664460.1|BW664460
genomic: GTTGCTATATTCTGAGGCCTTGGTCAATGGCAATATGGGAGATCATGCAAgttagtttct ... caatgtgcagGAGTTTTTCGATCCAGAAATAAAGAAAATGAAAATCAAGAACTGCTACTTC
EST: GTTGCTATATTCTGAGGCCTTGGTCAATGGCAATATGGGAGATCATGCAA GAGTTTTTCGATCCAGAAATAAAGAAAATGAAAATCAAGAACTGCTACTTCEST: gi|193444216|gb|FK409738.1|FK409738
genomic: GTTGCTATATTCTGAGGCCTTGGTCAATGGCAATATGGGAGATCATGCAAgttagtttct ... caatgtgcagGAGTTTTTCGATCCAGAAATAAAGAAAATGAAAATCAAGAACTGCTACTTC
EST: GTTGCTATATTCTGAGGCCTTGGTCAATGGCAATATGGGAGATCATGCAA GAGTTTTTCGATCCAGAAATAAAGAAAATGAAAATCAAGAACTGCTACTTCEST: gi|213604934|gb|DB956323.1|DB956323
genomic: GTTGCTATATTCTGAGGCCTTGGTCAATGGCAATATGGGAGATCATGCAAgttagtttct ... caatgtgcagGAGTTTTTCGATCCAGAAATAAAGAAAATGAAAATCAAGAACTGCTACTTC
EST: GTTGCTATATTCTGAGGCCTTGGTCAATGGCAATATGGGAGATCATGCAA GAGTTTTTCGATCCAGAAATAAAGAAAATGAAAATCAAGAACTGCTACTTCEST: gi|193310687|gb|FK274611.1|FK274611
genomic: GTTGCTATATTCTGAGGCCTTGGTCAATGGCAATATGGGAGATCATGCAAgttagtttct ... caatgtgcagGAGTTTTTCGATCCAGAAATAAAGAAAATGAAAATCAAGAACTGCTACTTC
EST: GTTGCTATATTCTGAGGCCTTGGTCAATGGCAATATGGGAGATCATGCAA GAGTTTTTCGATCCAGAAATAAAGAAAATGAAAATCAAGAACTGCTACTTC
genomic: GTTGCTATATTCTGAGGCCTTGGTCAATGGCAATATGGGAGATCATGCAAgttagtttct ... caatgtgcagGAGTTTTTCGATCCAGAAATAAAGAAAATGAAAATCAAGAACTGCTACTTC
tcttttaaatatttacataagtcagagttgctttaatttcgaaaacaatgtgcagGAGTTTTTCGATCCAGAAATAAAGAAAATGAAAATCAAGAACTGCTACTTCCCATTGTTTGTATCTCCTGGAGTTCTGCAAAAGGAGAAGGACCACGTTG
ctttaat putative branch site (score: 4)
taaatatttacataag TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtttcttcttcttcttctttttagataaatgaataagtggatgcgtttgtgtatagtgtacttgttttatactagagtttcattcaatgcatgagtgctatattgcaagaacatgaatacagaattgcagatttatttcttttaaatatttacataagtcagagttgctttaatttcgaaaacaatgtgcagGAGTTTTTCGATCCAGAAATAAAGAAAATGAAAATCAAGAACTGCTACTTCCCATTGTTTGTATCTCCTGGAGTTCTGCAAAAGGAGAAGGACCACGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA