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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaataattattttttgtgaatctgccctgcattagtttactgtattcaatctatgcctagacttaaaaatgcaatgcattattttattttaaaatatgatgtgcttcacttttcctttttgtcagCCATGGCAATATTTGATACGATGAGGCATATTCGACCTGATGTGTCCACT

Basic information

species Glycine max
transcript GLYMA19G40480.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G40480.1 (Glycine max), 3'ss of exon 4
lower sequence: AT1G02560.1 (Arabidopsis thaliana), 3'ss of exon 5
gtaataattattttttgtgaatctgccctgcattagtttactgtattca-atctatgcctagacttaaaaatgcaatgcattattttattttaaaat--atgatgtgcttcacttttcctttttgtcagCCATGGCAATATTTGATACGATGAGGCATATTCGACCTGATGTGTCCACT-----------------------
                                          ||| | | | || || |    ||||    |   ||   || |    |||||   |  ||||   | | ||  | |   |||   ||| |||||| ||||| ||||| |||||||| || || |||||||||||||||                       
------------------------------------------gtaataacaactttgtc--agcttactcttt--atcttttttccggttttatggttaatgactcg-tgcatctcttactttacccagGCATGGCTATATTCGATACTATGAGGCACATCCGGCCTGATGTGTCCACTGTTTGTGTTGGTCTAGCTGCTAG

upper sequence: GLYMA19G40480.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv07s0005g01530.t01 (Vitis vinifera), 3'ss of exon 5
gtaataattattttttg-tgaatctgccct-gcattagt-ttactgtattcaatctatgcctagacttaaaaatgcaatgcattattttattttaaaatatgatgtgcttcacttttcctttttgtcagCCATGGCAATATTTGATACGATGAGGCATATTCGACCTGATGTGTCCACT-----------------------
|||||   | | ||    | ||| |  | |  || | ||  || | |||| ||       ||   | |  | |     | ||   | |||||||     ||  | | | | | || |||  |    ||| |||||| ||||| || || ||||||||||| ||||||||||| ||||||                       
gtaatttctgtcttacaataaatttttcttcacactggtactagtttatttaa-------ctgagcatggagacttg-tacaggttcttattttcttgaat--tcttccttatttatcccct----cagGCATGGCTATATTCGACACAATGAGGCATATCCGACCTGATGTTTCCACTGTGTGTGTTGGACTAGCAGCCAG

upper sequence: GLYMA19G40480.1 (Glycine max), 3'ss of exon 4
lower sequence: PP1S49_191V6.1 (Physcomitrella patens), 3'ss of exon 5
gtaataattattttttgtgaatctgccctgcattagtttactgtattcaatctatgcctagacttaaaaatgcaatgcattattttattttaaaatatgatgtgcttcacttttcctttttgtcagCCATGGCAATATTTGATACGATGAGGCATATTCGACCTGATGTGTCCACT-----------------------
    |      |  |||||| | ||    | |  |      || | |   |||  |  |   ||| |   |  |     |  |||  | ||||| | |  ||||  | |        ||||| |||  |||||||| || || || ||||||||||||||||||||||||  |||                        
---gtggacggtaattgtgagtttg----gtaaca------tgaagttcgtctggggtt---ctttaggttttatcttgtagtttcctcttaaagttt--tgtgtatga--------ttttgacagGAATGGCAATCTTCGACACCATGAGGCATATTCGACCTGATGTGAGCACAGTCTGTGTTGGGCTTGCAGCCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcaatgcattattttattttaaaatatgatgtgcttcacttttcctttttgtcagCCATGGCAATATTTGATACGATGAGGCATATTCGACCTGATGTGTCCACT
                               tgcttcacttttcctt  CT-rich tract
       attattttattttaaa  TA-rich tract