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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcaagaattgacacttgttttttggttgcacattattgttctgcttgaaattttttttgatggaattcatatatatttttcttgcacataaagaattaaactgtagatgttttaattacaccatttttcatccttgtggaagagcagTTCATATATGATCTACCTGATAAACTAGGCATGTGCATCAAGTCCGAGGACTATGCAAATGCAGTCAAGTTCTATACTGGTGCAATGCCAATTTTTAAG

Basic information

species Glycine max
transcript GLYMA19G40380.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G40380.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv07s0005g01440.t01 (Vitis vinifera), 3'ss of exon 4
gtatgcaagaattgacacttgttttttggttgcacattattgttctgcttgaaattttttttgatggaattcatatatatttttcttgcacataaagaattaaactgtagatgttttaattacaccatttttcatccttgtggaagagcagTTCATATATGATCTACCTGATAAACTAGGCATGTGCATCAAGTCCGAGGACTATGCAAATGCAGTCAAGTTCTATACTGGTGCAATGCCAATTTTTAAG
                                              |   |||||  | ||   ||   ||||   ||| |||   |     |   |  ||   |  |  |||  |||   |||   ||  || ||  ||   ||||||||||||||||||||||||||  ||  || || |  || || || ||||| |  |||||  ||||||||| ||| |||||||| || ||||| |||||| ||
---------------------------------------------ggtcggaaataatcttatttgatgttca---atactttatgtaagttttg-gtgtttggccatgtatgagtta--cacagatttcatcttctgtggaaaagagcagTTCATATATGATCTACCTACTAGGCTTGGAAAATGTATTAAATCCGAAGCTTATGCTGATGCAGTCAGGTTTTATACTGGAGCCATGCCGATTTTTGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaattaaactgtagatgttttaattacaccatttttcatccttgtggaagagcagTTCATATATGATCTACCTGATAAACTAGGCATGTGCATCAAGTCCGAGGACTATGCAAATGCAGTCAAGTTCTATACTGGTGCAATGCCAATTTTTAAG
                 ttttaat  putative branch site (score: 3)
           tagatgttttaatta  TA-rich tract