1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tgatagttggaatttctcccaacctatataataatttttttttaaccatttgatggactgcagtttacactagtcttacttgtaaggcatcttttcgcagTGCTCACATATGGAACGGAAGATTACCCATTTACACTACTAACT
species | Glycine max |
transcript | GLYMA19G40340.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTTCTGCCGCTGACAGAAGCGCGTCTTGCTGTCGATCACTTGCAATAGCT TGCTCACATATGGAACGGAAGATTACCCATTTACACTAEST: gi|213614284|gb|DB964944.1|DB964944
genomic: GTTCTGCCGCTGACAGAAGCGCGTCTTGCTGTCGATCACTTGCAATAGCTgtaagcatac ... cttttcgcagTGCTCACATATGGAACGGAAGATTACCCATTTACACTA
EST: GTTCTGCCGCTGACAGAAGCGCGTCTTGCTGTCGATCACTTGCAATAGCT TGCTCACATATGGAACGGAEST: gi|213606122|gb|DB982423.1|DB982423
genomic: GTTCTGCCGCTGACAGAAGCGCGTCTTGCTGTCGATCACTTGCAATAGCTgtaagcatac ... cttttcgcagTGCTCACATATGGAACGGA
EST: GTTCTGCCGCTGACAGAAGCGCGTCTTGCTGTCGATCACTTGCAATAGCT TGCTCACATATGGAACGGAAGATTACCCATTTACACTACTAACTEST: gi|151407045|gb|EV276860.1|EV276860
genomic: GTTCTGCCGCTGACAGAAGCGCGTCTTGCTGTCGATCACTTGCAATAGCTgtaagcatac ... cttttcgcagTGCTCACATATGGAACGGAAGATTACCCATTTACACTACTAACT
EST: GTTCTGCCGCTGACAGAAGCGCGTCTTGCTGTCGATCACTTGCAATAGCT TGCTCACATATGGAACGGAAGATTACCCATTTACACTACTAACT
genomic: GTTCTGCCGCTGACAGAAGCGCGTCTTGCTGTCGATCACTTGCAATAGCTgtaagcatac ... cttttcgcagTGCTCACATATGGAACGGAAGATTACCCATTTACACTACTAACT
ccatttgatggactgcagtttacactagtcttacttgtaaggcatcttttcgcagTGCTCACATATGGAACGGAAGATTACCCATTTACACTACTAACT
gtcttac putative branch site (score: 3)
catcttttc putative PPT
atctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgatagttggaatttctcccaacctatataataatttttttttaaccatttgatggactgcagtttacactagtcttacttgtaaggcatcttttcgcagTGCTCACATATGGAACGGAAGATTACCCATTTACACTACTAACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - -ttctccc
- - - - - - - - - - - - - - - - - - - - - - -ccatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - actgcag