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gtttgtcattttctcttgatgactttcaaatgcagaatgtggatttttactaatttgatgatttattgatcaactatagGAAGACTTTTCTGCACAGTTGGAGTGCATCCAACACGTTGCAAG
species | Glycine max |
transcript | GLYMA19G38780.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGGGTCTCTAGAAGAATCAAGGGAGGCACTTGCCATTGCGGAAACAGATG GAAGACTTTTCTGCACAGTTGGAGTGCATCCAACACGTTGCAAGEST: gi|298194140|gb|HO040788.1|HO040788
genomic: TGGGTCTCTAGAAGAATCAAGGGAGGCACTTGCCATTGCGGAAACAGATGgtttgtcatt ... tcaactatagGAAGACTTTTCTGCACAGTTGGAGTGCATCCAACACGTTGCAAG
EST: TGGGTCTCTAGAAGAATCAAGGGAGGCACTTGCCATTGCGGAAACAGATG GAAGACTTTTCTGCACAGTTGGAGTGCATCCAACACGTTGCAAGEST: gi|298166829|gb|HO010268.1|HO010268
genomic: TGGGTCTCTAGAAGAATCAAGGGAGGCACTTGCCATTGCGGAAACAGATGgtttgtcatt ... tcaactatagGAAGACTTTTCTGCACAGTTGGAGTGCATCCAACACGTTGCAAG
EST: TGGGTCTCTAGAAGAATCAAGGGAGGCACTTGCCATTGCGGAAACAGATG GAAGACTTTTCTGCACAGTTGGAGTGCATCCAACACGTTGCAAGEST: gi|120492279|gb|EH220446.1|EH220446
genomic: TGGGTCTCTAGAAGAATCAAGGGAGGCACTTGCCATTGCGGAAACAGATGgtttgtcatt ... tcaactatagGAAGACTTTTCTGCACAGTTGGAGTGCATCCAACACGTTGCAAG
EST: TGGGTCTCTAGAAGAATCAAGGGAGGCACTTGCCATTGCGGAAACAGATG GAAGACTTTTCTGCACAGTTGGAGTGCATCCAACACGTTGCAAGEST: gi|192323850|gb|FK015631.1|FK015631
genomic: TGGGTCTCTAGAAGAATCAAGGGAGGCACTTGCCATTGCGGAAACAGATGgtttgtcatt ... tcaactatagGAAGACTTTTCTGCACAGTTGGAGTGCATCCAACACGTTGCAAG
EST: TGGGTCTCTAGAAGAATCAAGGGAGGCACTTGCCATTGCGGAAACAGATG GAAGACTTTTCTGCACAGTTGGAGTGCATCCAACACGTTGCAAG
genomic: TGGGTCTCTAGAAGAATCAAGGGAGGCACTTGCCATTGCGGAAACAGATGgtttgtcatt ... tcaactatagGAAGACTTTTCTGCACAGTTGGAGTGCATCCAACACGTTGCAAG
ttcaaatgcagaatgtggatttttactaatttgatgatttattgatcaactatagGAAGACTTTTCTGCACAGTTGGAGTGCATCCAACACGTTGCAAG
atttttactaatttga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtcattttctcttgatgactttcaaatgcagaatgtggatttttactaatttgatgatttattgatcaactatagGAAGACTTTTCTGCACAGTTGGAGTGCATCCAACACGTTGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG