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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagttatatattttagaattgaaccacattcatacattttaaaattttactgggttgcctttgattgctgtccctttctgttttccccttctattttgagagaagagaaaagttatagatgtgagctgttttgttctgatggtagAATACAACTAAGGAGAAGATGGAGATGACTACACCTGTTTTCACAAGTAAGAATCAATCTGATGGGGTTAAAATGGACATGACAACTCCTGTGTTAACAA

Basic information

species Glycine max
transcript GLYMA19G38010.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15285042|gb|BI468933.1|BI468933
EST:     ATGGTGCTTCTCGTTCCTTTAATGCTCTAGCTGAGTACCTTTTCGGTAAG                         AATACAACTAAGGAGAAGATGGAGATGACTACACCTGTTTTCACAAGTAAG
genomic: ATGGTGCTTCTCGTTCCTTTAATGCTCTAGCTGAGTACCTTTTCGGTAAGgtagttatat ... ctgatggtagAATACAACTAAGGAGAAGATGGAGATGACTACACCTGTTTTCACAAGTAAG
EST: gi|51341683|gb|CO983000.1|CO983000
EST:     ATGGTGCTTCTCGTTCCTTTAATGCTCTAGCTGAGTACCTTTTCGGTAAG                         AATACAACTAAGGAGAAGATGGAGATGACTACACCTGTTTTCACAAGTAAG
genomic: ATGGTGCTTCTCGTTCCTTTAATGCTCTAGCTGAGTACCTTTTCGGTAAGgtagttatat ... ctgatggtagAATACAACTAAGGAGAAGATGGAGATGACTACACCTGTTTTCACAAGTAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctattttgagagaagagaaaagttatagatgtgagctgttttgttctgatggtagAATACAACTAAGGAGAAGATGGAGATGACTACACCTGTTTTCACAAGTAAGAATCAATCTGATGGGGTTAAAATGGACATGACAACTCCTGTGTTAACAA
                                           ttctgat  putative branch site (score: 3)
                                      ttttgttct  CT-rich tract
                 aaaagttata  TA-rich tract