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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatgtttcgttgcttagcacatctgctattctgcttataagcaggactgcaatttcaaagaattgttttcccatgagctgtgaaccgtgaccatggaatgatgaagtgtaaaattatgaatgcattgtagccttgcagttaacatcctgtaaactgacacctgtctgaaaccatataattacagGGAATACATGGTTGATCTTATTGGGAAGCCGGGTTGCTTATGCGAGCCTGATTCCTTGGTCAATGGTCCATCTTCCATTTCATTTTCTTCACCCTTGTGC

Basic information

species Glycine max
transcript GLYMA19G37570.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G37570.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv08s0007g03910.t01 (Vitis vinifera), 3'ss of exon 4
gtatatgtttcgttgcttagcacatctgctattctgcttataagcaggactgcaatttcaaagaattgttttcccatgagctgtgaaccgtgaccatggaatgatgaagtgtaaaattatgaatgcattgtagccttgca---gttaacatcctgtaaactgacacctgtctgaaaccatataattacagGGAATACATGGTTGATCTTATTGGGAAGCCGGGTTGCTTATGCGAGCCTGATTCCTTGGTCAATGGTCCATCTTCCATTTCATTTTCTTCACCCTTGTGC
                                                                                        | ||   ||   ||  |||| || |   |    |         | | ||| |    ||| ||  || || |   |   | |  |  ||   ||| | | |||||| |   | |||||| |  |||| ||||| || |||||||||||||||||||| ||| ||||||||||| ||||||| ||| ||||||| || ||| ||
----------------------------------------------------------------------------------------cttg--tatcatatattgaattgcagtctctgtagcatgcctcatcattgaatatattagcaaactatacaaacatctcagagtataattgtattactgcagGGAGTTTCTAGTTGATTTGGTTGGCAAGCCAGGGTGCTTATGCGAGCCTGATTCTTTGCTCAATGGTCCAGCTTCCATCTCAATTTCTTCCCCATTGCGC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gccttgcagttaacatcctgtaaactgacacctgtctgaaaccatataattacagGGAATACATGGTTGATCTTATTGGGAAGCCGGGTTGCTTATGCGAGCCTGATTCCTTGGTCAATGGTCCATCTTCCATTTCATTTTCTTCACCCTTGTGC
                      aactgac  putative branch site (score: 2)
                                      aaaccatataatta  TA-rich tract