1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtatttaatttcttttatttaattgtcggcctataattaaattgtagtagagcttctcaaactattgcctttactacagAGGAAAATCTTCAAAAGGAACCTCGTATCATGGAACTTAGGAATCAA
species | Glycine max |
transcript | GLYMA19G37230.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTGAAAGATGAACTTTGCAAGGAGAATTTACAGCTTGCAG AGGAAAATCTTCAAAAGGAACCTCGTATCATGGAACTTAGGAATCAAEST: gi|151403740|gb|EV273550.1|EV273550
genomic: CTGAAAGATGAACTTTGCAAGGAGAATTTACAGCTTGCAGgtatttaatt ... tttactacagAGGAAAATCTTCAAAAGGAACCTCGTATCATGGAACTTAGGAATCAA
EST: CTGAAAGATGAACTTTGCAAGGAGAATTTACAGCTTGCAG AGGAAAATCTTCAAAAGGAACCTCGTATCATGGAACTTAGGAATCAAEST: gi|151404632|gb|EV274446.1|EV274446
genomic: CTGAAAGATGAACTTTGCAAGGAGAATTTACAGCTTGCAGgtatttaatt ... tttactacagAGGAAAATCTTCAAAAGGAACCTCGTATCATGGAACTTAGGAATCAA
EST: CTGAAAGATGAACTTTGCAAGGAGAATTTACAGCTTGCAG AGGAAAATCTTCAAAAGGAACCTCGTATCATGGAACTTAGGAATCAAEST: gi|254332260|gb|GR843844.1|GR843844
genomic: CTGAAAGATGAACTTTGCAAGGAGAATTTACAGCTTGCAGgtatttaatt ... tttactacagAGGAAAATCTTCAAAAGGAACCTCGTATCATGGAACTTAGGAATCAA
EST: CTGAAAGATGAACTTTGCAAGGAGAATTTACAGCTTGCAG AGGAAAATCTTCAAAAGGAACCTCGTATCATGGAACTTAGGAATCAAEST: gi|13563506|gb|BG551726.1|BG551726
genomic: CTGAAAGATGAACTTTGCAAGGAGAATTTACAGCTTGCAGgtatttaatt ... tttactacagAGGAAAATCTTCAAAAGGAACCTCGTATCATGGAACTTAGGAATCAA
EST: CTGAAAGATGAACTTTGCAAGGAGAATTTACAGCTTGCAG AGGAAAATCTTCAAAAGGAACCTCGTATCATGGAACTTAGGAATCAAEST: gi|21888222|gb|BQ741444.1|BQ741444
genomic: CTGAAAGATGAACTTTGCAAGGAGAATTTACAGCTTGCAGgtatttaatt ... tttactacagAGGAAAATCTTCAAAAGGAACCTCGTATCATGGAACTTAGGAATCAA
EST: CTGAAAGATGAACTTTGCAAGGAGAATTTACAGCTTGCAG AGGAAAATCTTCAAAAGGAACCTCGTATCATGGAACTTAGGAATCAA
genomic: CTGAAAGATGAACTTTGCAAGGAGAATTTACAGCTTGCAGgtatttaatt ... tttactacagAGGAAAATCTTCAAAAGGAACCTCGTATCATGGAACTTAGGAATCAA
gtcggcctataattaaattgtagtagagcttctcaaactattgcctttactacagAGGAAAATCTTCAAAAGGAACCTCGTATCATGGAACTTAGGAATCAA
ttgccttt CT-rich tract
tataattaaattgtag TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatttaatttcttttatttaattgtcggcctataattaaattgtagtagagcttctcaaactattgcctttactacagAGGAAAATCTTCAAAAGGAACCTCGTATCATGGAACTTAGGAATCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA