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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcattcagaaataggtgaaaaatggtgacttgttagtgcttcaattacatcgaattgtgtttcttcgtttcttttccttaattggtttgccaaggtaactatgttttcttccgcaatgcagGACCTGGTGCTCCAATTATCTTCAATTGT

Basic information

species Glycine max
transcript GLYMA19G35710.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192301012|gb|FG990112.1|FG990112
EST:     CATGACCAGGAGATCTGTTGCTGCACACCCATGGCATGACCTTGAGATAG                         GACCTGGTGCTCCAATTATCTTCAATTGT
genomic: CATGACCAGGAGATCTGTTGCTGCACACCCATGGCATGACCTTGAGATAGgtaagcattc ... cgcaatgcagGACCTGGTGCTCCAATTATCTTCAATTGT
EST: gi|10844730|gb|BF067948.1|BF067948
EST:     CATGACCAGGAGATCTGTTGCTGCACACCCATGGCATGACCTTGAGATAG                         GACCTGGTGCTCCAATTATCTTCAATTGT
genomic: CATGACCAGGAGATCTGTTGCTGCACACCCATGGCATGACCTTGAGATAGgtaagcattc ... cgcaatgcagGACCTGGTGCTCCAATTATCTTCAATTGT
EST: gi|254335061|gb|GR844846.1|GR844846
EST:     CATGACCAGGAGATCTGTTGCTGCACACCCATGGCATGACCTTGAGATAG                         GACCTGGTGCTCCAATTATCTTCAATTGT
genomic: CATGACCAGGAGATCTGTTGCTGCACACCCATGGCATGACCTTGAGATAGgtaagcattc ... cgcaatgcagGACCTGGTGCTCCAATTATCTTCAATTGT
EST: gi|9901982|gb|BE610950.1|BE610950
EST:     CATGACCAGGAGATCTGTTGCTGCACACCCATGGCATGACCTTGAGATAG                         GACCTGGTGCTCCAATTATCTTCAATTGT
genomic: CATGACCAGGAGATCTGTTGCTGCACACCCATGGCATGACCTTGAGATAGgtaagcattc ... cgcaatgcagGACCTGGTGCTCCAATTATCTTCAATTGT
EST: gi|193534902|gb|FK489066.1|FK489066
EST:     CATGACCAGGAGATCTGTTGTTGCACACCCATGGCATGACCTTGAGATAG                         GACCTGGTGCTCCAATTATCTTCAATTGT
genomic: CATGACCAGGAGATCTGTTGCTGCACACCCATGGCATGACCTTGAGATAGgtaagcattc ... cgcaatgcagGACCTGGTGCTCCAATTATCTTCAATTGT
EST: gi|193665609|gb|FK609230.1|FK609230
EST:     CATGACCAGGAGATCTGTTGCTGCACACCCATGGCATGACCTTGAGATAG                         GACCTGGTGCTCCAATTATCTTCAATTGT
genomic: CATGACCAGGAGATCTGTTGCTGCACACCCATGGCATGACCTTGAGATAGgtaagcattc ... cgcaatgcagGACCTGGTGCTCCAATTATCTTCAATTGT
EST: gi|22523592|gb|BU082403.1|BU082403
EST:     CATGACCAGGAGATCTGTTGCTGCACACCCATGGCATGACCTTGAGATAG                         GACCTGGTGCTCCAATTATCTTCAATTGT
genomic: CATGACCAGGAGATCTGTTGCTGCACACCCATGGCATGACCTTGAGATAGgtaagcattc ... cgcaatgcagGACCTGGTGCTCCAATTATCTTCAATTGT
EST: gi|193635563|gb|FK582088.1|FK582088
EST:     CATGACCAGGAGATCTGTTGCTGCACACCCATGGCATGACCTTGAGATAG                         GACCTGGTGCTCCAATTATCTTCAATTGT
genomic: CATGACCAGGAGATCTGTTGCTGCACACCCATGGCATGACCTTGAGATAGgtaagcattc ... cgcaatgcagGACCTGGTGCTCCAATTATCTTCAATTGT
EST: gi|193314904|gb|FK281404.1|FK281404
EST:     CATGACCAGGAAATCTGTTGCTGCACACCCATGGCATGACCTTGAGATAG                         GACCTGGTGCTCCAATTATCTTCAATTGT
genomic: CATGACCAGGAGATCTGTTGCTGCACACCCATGGCATGACCTTGAGATAGgtaagcattc ... cgcaatgcagGACCTGGTGCTCCAATTATCTTCAATTGT
EST: gi|193576426|gb|FK530793.1|FK530793
EST:     CATGACCAGGAGATCTGTTGCTGCACACCCATGGCATGACCTTGAGATAG                         GACCTGGTGCTCCAATTATCTTCTAATTTGT
genomic: CATGACCAGGAGATCTGTTGCTGCACACCCATGGCATGACCTTGAGATAGgtaagcattc ... cgcaatgcagGACCTGGTGCTCCAATTATCTTC-AATT-GT
EST: gi|254335060|gb|GR844845.1|GR844845
EST:     CATGACCAGGAGATCTGTTGCTGCACACCCATGGCATGACCTTGAGATAG                         GACCTGGTGCTCCAATTATCTTCAATTGT
genomic: CATGACCAGGAGATCTGTTGCTGCACACCCATGGCATGACCTTGAGATAGgtaagcattc ... cgcaatgcagGACCTGGTGCTCCAATTATCTTCAATTGT
EST: gi|208305097|gb|GE102798.1|GE102798
EST:     CATGACCAGGAGATCTGTTGCTGCACACCCATGGCATGACCTTGAGATAG                         GACCTGGTGCTCCAATTATCTTCAATTG
genomic: CATGACCAGGAGATCTGTTGCTGCACACCCATGGCATGACCTTGAGATAGgtaagcattc ... cgcaatgcagGACCTGGTGCTCCAATTATCTTCAATTG
EST: gi|151398751|gb|EV268622.1|EV268622
EST:     CATGACCAGGAGATCTGTTGCTGCACACCCATGGCATGACCTTGAGATAG                         GACCTGGTGCTCCAATTATCTTCAATTGT
genomic: CATGACCAGGAGATCTGTTGCTGCACACCCATGGCATGACCTTGAGATAGgtaagcattc ... cgcaatgcagGACCTGGTGCTCCAATTATCTTCAATTGT
EST: gi|298189455|gb|HO037858.1|HO037858
EST:     CATGACCAGGAGATCTGTTGCTGCACACCCATGGCATGACCTTGAGATAG                         GACCTGGTGCTCCAATTATCTTCAATTGT
genomic: CATGACCAGGAGATCTGTTGCTGCACACCCATGGCATGACCTTGAGATAGgtaagcattc ... cgcaatgcagGACCTGGTGCTCCAATTATCTTCAATTGT
EST: gi|208126482|gb|GD924788.1|GD924788
EST:     CATGACCAGGAGATCTGTTGCTGCACACCCATGGCATGACCTTGAGATAG                         GACCTGGTGCTCCAATTATCTTCAATTGTGTGATTG
genomic: CATGACCAGGAGATCTGTTGCTGCACACCCATGGCATGACCTTGAGATAGgtaagcattc ... cgcaatgcagGACCTGGTGCTCCAATTATCTTCAATTGTGTGATTG
EST: gi|8669991|gb|BE191098.1|BE191098
EST:     CATGACCAGGAGATCTGTTGCTGCACACCCATGGCATGACCTTGAGATAG                         GACCTGGTGCTCCAATTATCTTCAATTGT
genomic: CATGACCAGGAGATCTGTTGCTGCACACCCATGGCATGACCTTGAGATAGgtaagcattc ... cgcaatgcagGACCTGGTGCTCCAATTATCTTCAATTGT
EST: gi|17964359|gb|BM271095.1|BM271095
EST:     CATGACCAGGAGATCTGTTGCTGCACACCCATGGCATGACCTTGAGATAG                         GACCTGGTGCTCCAATTATCTTCAATTGT
genomic: CATGACCAGGAGATCTGTTGCTGCACACCCATGGCATGACCTTGAGATAGgtaagcattc ... cgcaatgcagGACCTGGTGCTCCAATTATCTTCAATTGT
EST: gi|120533838|gb|EH261971.1|EH261971
EST:     CATGACCAGGAGATCTGTTGCTGCACACCCATGGCATGACCTTGAGATAG                         GACCTGGTGCTCCAATTATCTTCAATTGT
genomic: CATGACCAGGAGATCTGTTGCTGCACACCCATGGCATGACCTTGAGATAGgtaagcattc ... cgcaatgcagGACCTGGTGCTCCAATTATCTTCAATTGT
EST: gi|298182727|gb|HO031462.1|HO031462
EST:     CATGACCAGGAGATCTGTTGCTGCACACCCATGGCATGACCTTGAGATAG                         GACCTGGTGCTCCAATTATCTTCAATTGT
genomic: CATGACCAGGAGATCTGTTGCTGCACACCCATGGCATGACCTTGAGATAGgtaagcattc ... cgcaatgcagGACCTGGTGCTCCAATTATCTTCAATTGT
EST: gi|207833133|gb|GD801810.1|GD801810
EST:     CACACCCATGGCATGACCTTGAGATAG                         GACCTGGTGCTCCAATTTATTCTTTCAATTGT
genomic: CACACCCATGGCATGACCTTGAGATAGgtaagcattc ... cgcaatgcagGACCTGGTGCTCCAA-TTA-TC-TTCAATTGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttcttttccttaattggtttgccaaggtaactatgttttcttccgcaatgcagGACCTGGTGCTCCAATTATCTTCAATTGT
                          aggtaac  putative branch site (score: 3)
                                ctatgttttcttcc  CT-rich tract
                                 tatgtttt  TA-rich tract