1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...agttacttaaagttcatcatcatgttaatgctcaaacttgtgctgtaattttgtaactctttaatttcattttttttttcaaatctttcaggacattcagGTTGCATTGCGGGATGAAATCAAAAGTGCTTGTGAATATCGTCCATTTGAGAAATGTGACTATGGTTCAAGAATCGCCAATGAGATTTGTCACAAGAAAG
species | Glycine max |
transcript | GLYMA19G35290.4 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGAAGGATGTGGTCCAAAACCACTGCCTTGAGTTCATGCAATTAATCAAG GTTGCATTGCGGGATGAAATCAAAAGTGCTTGTGAATATCGTCCATTTGAGEST: gi|254318495|gb|GR832663.1|GR832663
genomic: GGAAGGATGTGGTCCAAAACCACTGCCTTGAGTTCATGCAATTAATCAAGgtccttgtct ... ggacattcagGTTGCATTGCGGGATGAAATCAAAAGTGCTTGTGAATATCGTCCATTTGAG
EST: GGAAGGATGTGGTCCAAAACCACTGCCTTGAGTTCATGCAATTAATCAAGGACATTCAGEST: gi|26059460|gb|CA802374.1|CA802374
genomic: GGAAGGATGTGGTCCAAAACCACTGCCTTGAGTTCATGCAATTAAT------CA---AGgtccttgtct ... gg
EST: GGAAGGATGTGGTCCAAAACCACTGCCTTGAGTTCATGCAATTAATCAAGGACATTCAGEST: gi|254318496|gb|GR832664.1|GR832664
genomic: GGAAGGATGTGGTCCAAAACCACTGCCTTGAGTTCATGCAATTAAT------CA---AGgtccttgtct ... gg
EST: GGAAGGATGTGGTCCAAAACCACTGCCTTGAGTTCATGCAATTAATCAAGGACATTCAGEST: gi|209727982|gb|BW666702.1|BW666702
genomic: GGAAGGATGTGGTCCAAAACCACTGCCTTGAGTTCATGCAATTAAT------CA---AGgtccttgtct ... gg
EST: GGAAGGATGTGGTCCAAAACCACTGCCTTGAGTTCATGCAATTAATCAAGGACATTCAGEST: gi|192334603|gb|FK025850.1|FK025850
genomic: GGAAGGATGTGGTCCAAAACCACTGCCTTGAGTTCATGCAATTAAT------CA---AGgtccttgtct ... gg
EST: GGAAGGATGTGGTCCAAAACCACTGCCTTGAGTTCATGCAATTAATCAAGGACATTCAGEST: gi|13790773|gb|BG653364.1|BG653364
genomic: GGAAGGATGTGGTCCAAAACCACTGCCTTGAGTTCATGCAATTAAT------CA---AGgtccttgtct ... gg
EST: GGAAGGATGTGGTCCAAAACCACTGCCTTGAGTTCATGCAATTAATCAAGGACATTCAG
genomic: GGAAGGATGTGGTCCAAAACCACTGCCTTGAGTTCATGCAATTAAT------CA---AGgtccttgtct ... gg
taattttgtaactctttaatttcattttttttttcaaatctttcaggacattcagGTTGCATTGCGGGATGAAATCAAAAGTGCTTGTGAATATCGTCCATTTGAGAAATGTGACTATGGTTCAAGAATCGCCAATGAGATTTGTCACAAGAAAG
taactctttaatttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agttacttaaagttcatcatcatgttaatgctcaaacttgtgctgtaattttgtaactctttaatttcattttttttttcaaatctttcaggacattcagGTTGCATTGCGGGATGAAATCAAAAGTGCTTGTGAATATCGTCCATTTGAGAAATGTGACTATGGTTCAAGAATCGCCAATGAGATTTGTCACAAGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - -tcatgtt
- - - - - - - - - - - - - - - ctcaaac
- - - - - - - - - - - - - - - - - - - - tgctgta