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gtaaagcctctttgttttcagagagctttttcaattgatcaaagaaaaaagctatgtattgcttgatgctggtttgatattgttttttaaaatttgttgatgtagGTGATGGGAGGGTTTTGGAGCCGTGCCAAGCAATTCTTAATTCAACTTCTAGTAGTTTAAAAGCTGCCAAGCTTCCTCGGAATTTAACTAATTCAAATGA
species | Glycine max |
transcript | GLYMA19G35010.3 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAGCTTGGATGCCACTTTTTGTGCTAGTTTGTTTCAGCCATGTTCTTCTG GTGATGGGAGGGTTTTGGAGCCGTGCCAAGCAATTCTTAATTCAACTTCTAEST: gi|213617091|gb|DB961571.1|DB961571
genomic: AAGCTTGGATGCCACTTTTTGTGCTAGTTTGTTTCAGCCATGTTCTTCTGgtaaagcctc ... gttgatgtagGTGATGGGAGGGTTTTGGAGCCGTGCCAAGCAATTCTTAATTCAACTTCTA
EST: AAGCTTGGATGCCACTTTTTGTGCTAGTTTGTTTT--CCATGTTCTTCTG GTGATGGGAGGGTTTTGGAGCCGTGCCAAGCAATTCTTAATTCAACTTCTAEST: gi|209704697|gb|BW656675.1|BW656675
genomic: AAGCTTGGATGCCACTTTTTGTGCTAGTTTGTTTCAGCCATGTTCTTCTGgtaaagcctc ... gttgatgtagGTGATGGGAGGGTTTTGGAGCCGTGCCAAGCAATTCTTAATTCAACTTCTA
EST: AAGCTTGGATGCCACTTTTTGTGCTAGTTTGTTTCAGCCATGTTCTTCTG GTGATGGGAGGGTTTTGGAGCCGTGCCAAGEST: gi|192295523|gb|FG988097.1|FG988097
genomic: AAGCTTGGATGCCACTTTTTGTGCTAGTTTGTTTCAGCCATGTTCTTCTGgtaaagcctc ... gttgatgtagGTGATGGGAGGGTTTTGGAGCCGTGCCAAG
EST: AAGCTTGGATGCCACTTTTTGTGCTAGTTTGTTTCAGCCATGTTCTTCTG GTGATGGGAGGGTTTTGGAGCCGTGCCAAGCAATTCTTAATTCAACTTCTAEST: gi|254319887|gb|GR830911.1|GR830911
genomic: AAGCTTGGATGCCACTTTTTGTGCTAGTTTGTTTCAGCCATGTTCTTCTGgtaaagcctc ... gttgatgtagGTGATGGGAGGGTTTTGGAGCCGTGCCAAGCAATTCTTAATTCAACTTCTA
EST: AGCTTGGATGCCACTTTTTGTGCGGGGTTTGTTTCAGCCATGTTCTTCTG GTGATGGGAGGGTTTTGGAGCCGTGCCAAGCAATTCTTAATTCAACTTCTAEST: gi|7685076|gb|AW755724.1|AW755724
genomic: AGCTTGGATGCCACTTTTTGTGCTAG-TTTGTTTCAGCCATGTTCTTCTGgtaaagcctc ... gttgatgtagGTGATGGGAGGGTTTTGGAGCCGTGCCAAGCAATTCTTAATTCAACTTCTA
EST: AAGCTTGGATGCCACTTTTTGTGCTAGTTTGTTTCAGCCATGTTCTTCTG GTGATGGGAGGGTTTTGGAGC
genomic: AAGCTTGGATGCCACTTTTTGTGCTAGTTTGTTTCAGCCATGTTCTTCTGgtaaagcctc ... gttgatgtagGTGATGGGAGGGTTTTGGAGC
gctatgtattgcttgatgctggtttgatattgttttttaaaatttgttgatgtagGTGATGGGAGGGTTTTGGAGCCGTGCCAAGCAATTCTTAATTCAACTTCTAGTAGTTTAAAAGCTGCCAAGCTTCCTCGGAATTTAACTAATTCAAATGA
tgttgat putative branch site (score: 4)
tttgatattgtttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaagcctctttgttttcagagagctttttcaattgatcaaagaaaaaagctatgtattgcttgatgctggtttgatattgttttttaaaatttgttgatgtagGTGATGGGAGGGTTTTGGAGCCGTGCCAAGCAATTCTTAATTCAACTTCTAGTAGTTTAAAAGCTGCCAAGCTTCCTCGGAATTTAACTAATTCAAATGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT