1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ttaatgtttgatttcccattatctgttctcacaaagttatgacactttctccttcttttccccttccacaccattctggttgaatggcacttgtgtccagATCAGTAGTCGTAATTTGGATAGAGTGCGGAAATTGAAATGTGCAATGACCAGGTTGACAATTCGAGTTCAAAAG
species | Glycine max |
transcript | GLYMA19G34430.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GAGAGCTAGAGACTTCTGCTTATCCAGCTTTGGACGAACTGACCTCTAAG ATCAGTAGTCGTAATTTGGATAGAGTGCGGAAATTGAAATGTGCAATGACCEST: gi|10237341|gb|BE806229.1|BE806229
genomic: GAGAGCTAGAGACTTCTGCTTATCCAGCTTTGGACGAACTGACCTCTAAGgtaaagcctt ... ttgtgtccagATCAGTAGTCGTAATTTGGATAGAGTGCGGAAATTGAAATGTGCAATGACC
EST: GAGACTTCTGCTTATCCAGCTTTGGACGAACTGACCTCTAAG ATCAGTAGTCGTAATTTGGATAGAGTGCGGAAATTGAAATGTGCAATGACC
genomic: GAGACTTCTGCTTATCCAGCTTTGGACGAACTGACCTCTAAGgtaaagcctt ... ttgtgtccagATCAGTAGTCGTAATTTGGATAGAGTGCGGAAATTGAAATGTGCAATGACC
tttctccttcttttccccttccacaccattctggttgaatggcacttgtgtccagATCAGTAGTCGTAATTTGGATAGAGTGCGGAAATTGAAATGTGCAATGACCAGGTTGACAATTCGAGTTCAAAAG
ttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttaatgtttgatttcccattatctgttctcacaaagttatgacactttctccttcttttccccttccacaccattctggttgaatggcacttgtgtccagATCAGTAGTCGTAATTTGGATAGAGTGCGGAAATTGAAATGTGCAATGACCAGGTTGACAATTCGAGTTCAAAAG
- -atgtttg
- - - - - -tttccca