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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaataacaatcacaaatgctactattagcagcactatctcagtcattttcttatttgcaaaaatgattaaactgcatttttgttgtaaatgcagGTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATCGAACGGGCCAG

Basic information

species Glycine max
transcript GLYMA19G34180.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193350465|gb|FK316251.1|FK316251
EST:     CGCACCCGTAAAG                         GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATCGAACGGGCCAG
genomic: CGCACCCGTAAAGgtaataacaa ... gtaaatgcagGTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATCGAACGGGCCAG
EST: gi|193708580|gb|FK644972.1|FK644972
EST:     CCAAGATCTACTTGCTAAGGGCAGTGTATTACTCAAGCGCACCCGTAAAG                         GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATCGAACGGGCCAG
genomic: CCAAGATCTACTTGCTAAGGGCAGTGAATTACTCAAGCGCACCCGTAAAGgtaataacaa ... gtaaatgcagGTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATCGAACGGGCCAG
EST: gi|207758641|gb|GD728687.1|GD728687
EST:     CTACTTGCTAAGGGCAGTGAATTACTCAAGCGCACCCGTAAAG                         GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATCGAACGGGCCAG
genomic: CTACTTGCTAAGGGCAGTGAATTACTCAAGCGCACCCGTAAAGgtaataacaa ... gtaaatgcagGTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATCGAACGGGCCAG
EST: gi|193358947|gb|FK325377.1|FK325377
EST:     CGCACCCGTAAAG                         GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATCGAACGGGCCAG
genomic: CGCACCCGTAAAGgtaataacaa ... gtaaatgcagGTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATCGAACGGGCCAG
EST: gi|208199691|gb|GD999946.1|GD999946
EST:     CCAAGATCTACTTGCTAAGGGCAGTGAATTACTCAAGCGCACCCGTAAAG                         GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATCGAACGGGCCAG
genomic: CCAAGATCTACTTGCTAAGGGCAGTGAATTACTCAAGCGCACCCGTAAAGgtaataacaa ... gtaaatgcagGTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATCGAACGGGCCAG
EST: gi|193363294|gb|FK325782.1|FK325782
EST:     CGCACCCGTAAAG                         GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATCGAACGGGCCAG
genomic: CGCACCCGTAAAGgtaataacaa ... gtaaatgcagGTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATCGAACGGGCCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagtcattttcttatttgcaaaaatgattaaactgcatttttgttgtaaatgcagGTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATCGAACGGGCCAG
     attttcttatttgcaa  TA-rich tract