1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...cttcaatttcattacttgcaaattgaaaacacatttcttgaggacccattagaagtcttactgatcactaaattttttttgtgtttctatgatactgcagTGGTGGACAATGGAATTCAGGTGGACAATGTGATAGTGAAACTGATCCAATTGACAATGAGAAGTATCTAACCGAGTATCCAGATAAAATGAAGGTTTTG
species | Glycine max |
transcript | GLYMA19G33110.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CCGTCCAAGACCATGGTCTTCTTCAGAGGCTATTCTGCTTCCCATTTCAG TGGTGGACAATGGAATTCAGGTGGACAATGTGATAGTGAAACTGATCCAATEST: gi|58014828|gb|CX701570.1|CX701570
genomic: CCGTCCAAGACCATGGTCTTCTTCAGAGGCTATTCTGCTTCCCATTTCAGgtgaagtaca ... gatactgcagTGGTGGACAATGGAATTCAGGTGGACAATGTGATAGTGAAACTGATCCAAT
EST: CCGTCCAAGACCATGGTCTTCTTCAGAGGCTATTCTGCTTCCCATTTCAG TGGTGGACAATGGAATTCAGGTGGACAATGTGATAGTGAAACTGATCCAAT
genomic: CCGTCCAAGACCATGGTCTTCTTCAGAGGCTATTCTGCTTCCCATTTCAGgtgaagtaca ... gatactgcagTGGTGGACAATGGAATTCAGGTGGACAATGTGATAGTGAAACTGATCCAAT
ccattagaagtcttactgatcactaaattttttttgtgtttctatgatactgcagTGGTGGACAATGGAATTCAGGTGGACAATGTGATAGTGAAACTGATCCAATTGACAATGAGAAGTATCTAACCGAGTATCCAGATAAAATGAAGGTTTTG
cactaaa putative branch site (score: 2)
taaattttttttgtgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttcaatttcattacttgcaaattgaaaacacatttcttgaggacccattagaagtcttactgatcactaaattttttttgtgtttctatgatactgcagTGGTGGACAATGGAATTCAGGTGGACAATGTGATAGTGAAACTGATCCAATTGACAATGAGAAGTATCTAACCGAGTATCCAGATAAAATGAAGGTTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - cttgcaa
- - - - - - - - - - - - - -aacacat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - cttactg