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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacactctgcatgcatcatgtcctaattgttgtttatacttaatagactccaaacatgtaaaataaaagttcaaacctgttaaaaaatggttccatttatatacctagctgttttccatttctactcttccagGTGTTTAATGAGATAAACAGCAGAGATATTGATAAGATAAACATATTCAGAGGCATGTTTGACAGCCGGATATTTTTGGCGATAATTTTCGCCACCGTGG

Basic information

species Glycine max
transcript GLYMA19G31770.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G31770.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv08s0007g08960.t01 (Vitis vinifera), 3'ss of exon 6
-----gtacactctgcatgcatcatgtcctaattgttgtttatacttaatagactccaaacatgtaaaataaaagttcaaacctgttaaaaaatggttccatttatatacctagctgttttccatt--tctactcttccagGTGTTTAATGAGATAAACAGCAGAGATATTGATAAGATAAACATATTCAGAGGCATGTTTGACAGCCGGATATTTTTGGCGATAATTTTCGCCACCGTGG
      |  | | || |||  | ||     | ||||    |     |    || | |  | ||      | |   ||  |     |||||       || |   | |||  | |   || | | ||  || ||||| | || |||| ||||| ||||||||| | |||||||| ||||||||||| ||  | || |||||||||||| |||||||| |     | ||  ||  ||| ||||
gtatcatttattatgtatg-gttattgttgatttgtctcatccttgtttctgaattctgatataccttgtcagcatttcatgtctttaaa------ctctaccaacataattggtgtttcttctttgatccactctgc-agCTGTTCAATGAAATAAACAGCCGTGATATTGAGAAGATAAACATTTTTCGTGGTATGTTTGACAGCTGGATATTTATCATAGTCATGGTCTGCACAGTGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23734183|gb|BU765317.1|BU765317
EST:     CAACGAAAGTGCTCAACACTTTGATATTCAACTCCTTTGTATTTTGCCAG                         GTGTTTAATGAGATAAACAGCAGAGATATTGATAAGATAAACATATTCAGA
genomic: CAACGAAAGTGCTCAACACTTTGATATTCAACTCCTTTGTATTTTGCCAGgtacactctg ... actcttccagGTGTTTAATGAGATAAACAGCAGAGATATTGATAAGATAAACATATTCAGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttaaaaaatggttccatttatatacctagctgttttccatttctactcttccagGTGTTTAATGAGATAAACAGCAGAGATATTGATAAGATAAACATATTCAGAGGCATGTTTGACAGCCGGATATTTTTGGCGATAATTTTCGCCACCGTGG
                              ctgttttccatttcta  CT-rich tract
                atttatata  TA-rich tract