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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatctcctgcaataattgactgaaactatgctagtcttctttctttacccttatgcttgttatctttgaacacttccaactccaagtactactactacatttgcaaatcttctatacatctttccaatgcactaaatgggtttcacatgtttctggtgcatgctggatttctcagGGAACAGTCATCACAAGCTATTCTGAAAGCCTTGAGGGATGAAAATCTGAATGATCCTCGTGAACGAATTGAGATTGCACAAAGCCATGTTTTCTACAAG

Basic information

species Glycine max
transcript GLYMA19G31730.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G31730.1 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os01g71280.1 (Oryza sativa), 3'ss of exon 5
gtaatctcctgcaataattgactgaaactatgctagtcttctttctttacccttatgcttgttatctttgaacacttccaactccaagtactactactacatttgcaaatcttctatacatctttccaatgcactaaatgggtttcacatgtttctggtgca-tgctggatttctcagGGAACAGTCATCACAAGCTATTCTGAAAGCCTTGAGGGATGAAAATCTGAATGATCCTCGTGAACGAATTGAGATTGCACAAAGCCATGTTTTCTACAAG
                                                                          ||| ||  || | ||    |  | || ||| | |    |   || | |    |  ||    ||   |     |  | | | |    || || |    |   |||||| |  ||  ||  || ||||||| ||||| |||| |||||||   ||||||||||||||||| | |||||||| || ||||||||||  ||||||   
-------------------------------------------------------------------------tcttacatgtcaaggtcaatcatcaactttttctataacttagtataacacatc--tgtttcaaccag---caatgtatctttaactcactgttttgatctacagGGAGCTCTCGACAAGAGATATTCTGCAAGCCCTGAGAGATGAAACCATGAATGATCCTCGTGAAAGGATTGAGATGGCGCAAAGCCATGCATTCTACCGC

upper sequence: GLYMA19G31730.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G155348_T01 (Zea mays), 3'ss of exon 5
gtaatctcctgcaataattgactgaaactatgctagtcttctttctttacccttatgcttgttatctttgaacacttccaactccaagtactactactacatttgcaaatcttctatacatctttccaatgcactaaatgggtttcacatgtttctggtgcatgctggatttct---cagGGAACAGTCATCACAAGCTATTCTGAAAGCCTTGAGGGATGAAAATCTGAATGATCCTCGTGAACGAATTGAGATTGCACAAAGCCATGTTTTCTACAAG
      |  ||| ||   | |     ||| | |   | |      |||||  |  ||||||  |    |||   |  |       | | | |      | |  ||   |  |   |  |||   |   ||    |  ||     || | || ||  | |  |  |  || || |   |||||| |   || ||   |  |||||  ||||| ||||||| ||||   ||||||||||||| ||| | |||||||| |||||||||||||  ||||||   
----gtttgtgctatgtatcatcactactctccatatttggagagtttacagt-gtgcttg--aggagtgagtgccgcagtgcagacgaagtg-----agaagtgaccacttctcactcattcattttattggtttcattttactctcctgatta-gatatagacctgacttatgtgcagGGAGCTCCCAGCAAGGGACATTCTTCAAGCCCTGAGGGACGAAACGATGAATGATCCTCGGGAAAGGATTGAGATGGCACAAAGCCATGCATTCTACCGC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttccaatgcactaaatgggtttcacatgtttctggtgcatgctggatttctcagGGAACAGTCATCACAAGCTATTCTGAAAGCCTTGAGGGATGAAAATCTGAATGATCCTCGTGAACGAATTGAGATTGCACAAAGCCATGTTTTCTACAAG
         cactaaa  putative branch site (score: 2)
                                               tttctc  putative PPT
          actaaat  TA-rich tract