1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...cgactggtgtacaaataaggaggcaagacctgcagcatgtcatgattttaatggtgattttctgacctttagccttatttaattcatattttttttgcagCAAATTTGGTATTAGGATCTGGATCTATTCTTGGGCGTCTTTTATCTTTTCCTTCTGCTGCACTAAATATGCAAAACAATAGGATGTTTCCTCCATCTCT
species | Glycine max |
transcript | GLYMA19G29990.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTGGACATTCATATTCTCAAACCTTATTGTGCAATGGGCTCAGTGGTTAG CAAATTTGGTATTAGGATCTGGATCTAEST: gi|15813140|gb|BI785415.1|BI785415
genomic: TTGGACATTCATATTCTCAAACCTTATTGTGCAATGGGCTCAGTGGTTAGgtatgtgatg ... ttttttgcagCAAATTTGGTATTAGGATCTGGATCTA
EST: CTCAAACCTTATTGTGCAATGGGCTCAGTGGTTAG CAAATTTGGTATTAGGATCTGGATCTATTCTTGGGCGTCTTTTATCTTTTCEST: gi|4313915|gb|AI461034.1|AI461034
genomic: CTCAAACCTTATTGTGCAATGGGCTCAGTGGTTAGgtatgtgatg ... ttttttgcagCAAATTTGGTATTAGGATCTGGATCTATTCTTGGGCGTCTTTTATCTTTTC
EST: TTGGACATTCATATTCTCAAACCTTATTGTGCAATGGGCTCAGTGGTTAG CAAATTTGGTATTAGGATCTGGATCTATTCTTGGGCGTCTTTTATCTTTTC
genomic: TTGGACATTCATATTCTCAAACCTTATTGTGCAATGGGCTCAGTGGTTAGgtatgtgatg ... ttttttgcagCAAATTTGGTATTAGGATCTGGATCTATTCTTGGGCGTCTTTTATCTTTTC
ttttaatggtgattttctgacctttagccttatttaattcatattttttttgcagCAAATTTGGTATTAGGATCTGGATCTATTCTTGGGCGTCTTTTATCTTTTCCTTCTGCTGCACTAAATATGCAAAACAATAGGATGTTTCCTCCATCTCT
ttcatatttttttt CT-rich tract
tttagccttatttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgactggtgtacaaataaggaggcaagacctgcagcatgtcatgattttaatggtgattttctgacctttagccttatttaattcatattttttttgcagCAAATTTGGTATTAGGATCTGGATCTATTCTTGGGCGTCTTTTATCTTTTCCTTCTGCTGCACTAAATATGCAAAACAATAGGATGTTTCCTCCATCTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- actggtg
- - - - - - - - - - - - - -acctgca
- - - - - - - - - - - - - - - - - gcatgtc
- - - - - - - - - - - - - - - - - - - - - - - - -aatggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgacct