Sequence
atgc intronic sequence ATGC exonic sequencegtgagtaattgtttgtttctgtcatttcatttcaatggccattgaagtgaaatcaaatcatatgcttcatacactattgcccctcatgttttttcaaactagGATCTTGGTGGATCTCTAGGTAGAGACGCGGCTACAGGACGGGGAGTCCTCTTTGCAACAGAGGCTTTGCTTAATGAGTATGGGAAGAGTGTATCTGGAC
Basic information
species | Glycine max |
transcript | GLYMA19G28770.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G28770.1 (Glycine max), 3'ss of exon 4
lower sequence: AT3G03910.1 (Arabidopsis thaliana), 3'ss of exon 4
gtgagtaattgtttgtttctgtcatttcatttcaatggccattgaagtgaaatcaaatcata--tgcttcatacactattgcccctcatgttttttcaaactagGATCTTGGTGGATCTCTAGGTAGAGACGCGGCTACAGGACGGGGAGTCCTCTTTGCAACAGAGGCTTTGCTTAATGAGTATGGGAAGAGTGTATCTGGAC
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gtaagtgaccgttctaatcgcggttttaggttggttcggtttatgtgttcaactaatctaaaactgaatgagatttgatttttgaggatgatgttttgagc-agGATCTTGGTGGATCTCTTGGGAGAGATGCTGCTACAGGAAGAGGAGTGTTGTTTGCAACAGAAGCTTTACTCAACGAACATGGAAAGACCATATCTGGAC
upper sequence: GLYMA19G28770.1 (Glycine max), 3'ss of exon 4
lower sequence: AT5G18170.1 (Arabidopsis thaliana), 3'ss of exon 4
gtgagtaattgtttgtttctgtcatttcatttcaatggccattgaagtgaaatcaaatcatatgcttcatacactattgcccctcatgttttttcaaactagGATCTTGGTGGATCTCTAGGTAGAGACGCGGCTACAGGACGGGGAGTCCTCTTTGCAACAGAGGCTTTGCTTAATGAGTATGGGAAGAGTGTATCTGGAC
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gtaagtaaagaataatcacaatcttgttttgctaatgactg-----gtttaaccacctga-atgtttaatg--------------atgtttat--gaaccagGATCTTGGTGGATCGCTAGGGAGAGACGCGGCTACTGGAAGAGGAGTGATGTTTGGTACCGAAGCTTTGCTTAACGAGCACGGAAAGACCATATCAGGGC
upper sequence: GLYMA19G28770.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv08s0007g07400.t01 (Vitis vinifera), 3'ss of exon 6
gtgagtaattgtttgtttctgtcatttcatttcaatggccattgaagtgaaatcaaatcatatgc-ttcatacactattgcccctcatgttttttcaaactagGATCTTGGTGGATCTCTAGGTAGAGACGCGGCTACAGGACGGGGAGTCCTCTTTGCAACAGAGGCTTTGCTTAATGAGTATGGGAAGAGTGTATCTGGAC
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---attctttggcatatcctatattgaaatcaccatgatgtatattgctgccttggattctgtttgtttctataatctgacagtgataaattctttaaattagGATCTCGGTGGATCTCTGGGCAGAGATGCAGCTACAGGAAGGGGAGTACTCTTTGCAACAGAGGCCCTTCTTCATGAACATGGGAAGAGCATTGCCGGACMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|37997102|gb|CF808691.1|CF808691EST: GAAAACCTATA GATCTTGGTGGATCTCTAGGTAGAGACGCGGCTACAGGACGGGGAGTCCTC
genomic: GAAAACCTATAgtgagtaatt ... ttcaaactagGATCTTGGTGGATCTCTAGGTAGAGACGCGGCTACAGGACGGGGAGTCCTC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgaaatcaaatcatatgcttcatacactattgcccctcatgttttttcaaactagGATCTTGGTGGATCTCTAGGTAGAGACGCGGCTACAGGACGGGGAGTCCTCTTTGCAACAGAGGCTTTGCTTAATGAGTATGGGAAGAGTGTATCTGGAC
cccctcatgttttttc CT-rich tract
ttttttcaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgagtaattgtttgtttctgtcatttcatttcaatggccattgaagtgaaatcaaatcatatgcttcatacactattgcccctcatgttttttcaaactagGATCTTGGTGGATCTCTAGGTAGAGACGCGGCTACAGGACGGGGAGTCCTCTTTGCAACAGAGGCTTTGCTTAATGAGTATGGGAAGAGTGTATCTGGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA