1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaggtttaatttcaatgttggaatagctataatgacatttctacaaagtctgatttatggttttatcttcctgcactcattgcttcaatttgttggcagGCATATATCCATGGCAAGAGATTACATTGGTGAAGAAAGTTAAATACGATGATGCCCTGGTTGAGGCAGCATGGCCCCTAGGCAGCGCCATTGAAGCCGT
species | Glycine max |
transcript | GLYMA19G28460.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCTTTGCATGGATCTTATATACCAGTATACACTGCTTGTTGATGGGTTTG GCATATATCCATGGCAAGAGATTACATTGGTGAAGAAAGTTAAATACGATGEST: gi|151409538|gb|EV279346.1|EV279346
genomic: TCTTTGCATGGATCTTATATACCAGTATACACTGCTTGTTGATGGGTTTGgtaggtttaa ... ttgttggcagGCATATATCCATGGCAAGAGATTACATTGGTGAAGAAAGTTAAATACGATG
EST: TCTTTGCATGGATCTTATATACCAGTATACACTGCTTGTTGATGGGTTTG GCATATATCCATGGCAAGAGATTACATTGGTGAAGAAAGTTAAATACGATGEST: gi|192327286|gb|FK017763.1|FK017763
genomic: TCTTTGCATGGATCTTATATACCAGTATACACTGCTTGTTGATGGGTTTGgtaggtttaa ... ttgttggcagGCATATATCCATGGCAAGAGATTACATTGGTGAAGAAAGTTAAATACGATG
EST: TCTTTGCATGGATCTTATATACCAGTATACACTGCTTGTTGATGGGTTTG GCATATATCCATGGCAAGAGATTACATTGGTGAAGAAAGTTAAATACGATG
genomic: TCTTTGCATGGATCTTATATACCAGTATACACTGCTTGTTGATGGGTTTGgtaggtttaa ... ttgttggcagGCATATATCCATGGCAAGAGATTACATTGGTGAAGAAAGTTAAATACGATG
aaagtctgatttatggttttatcttcctgcactcattgcttcaatttgttggcagGCATATATCCATGGCAAGAGATTACATTGGTGAAGAAAGTTAAATACGATGATGCCCTGGTTGAGGCAGCATGGCCCCTAGGCAGCGCCATTGAAGCCGT
gtctgat putative branch site (score: 4)
atttatggttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggtttaatttcaatgttggaatagctataatgacatttctacaaagtctgatttatggttttatcttcctgcactcattgcttcaatttgttggcagGCATATATCCATGGCAAGAGATTACATTGGTGAAGAAAGTTAAATACGATGATGCCCTGGTTGAGGCAGCATGGCCCCTAGGCAGCGCCATTGAAGCCGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC