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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtttcagacttggtgcatgtttagtgtcattgttttgtattacatctgtttttgacgagtttctttgattttatatactatataatgcagGCGGTGAAGAAGCTTGGTTTGTGGGGTCTCTTTACGCGTGGTCTCCCCCTCCGAATTGTTATGATTGGAACTCTTACTGGAGCCCAATGGGGAATATATG

Basic information

species Glycine max
transcript GLYMA19G27380.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G27380.1 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os06g10810.1 (Oryza sativa), 3'ss of exon 4
gtgagtttcagacttggtgca-tg-tttagtgtcattgttttgtattacatctgtttttgacgagtttct---------ttgattttatatactatataatgcagGCGGTGAAGAAGCTTGGTTTGTGGGGTCTCTTTACGCGTGGTCTCCCCCTCCGAATTGTTATGATTGGAACTCTTACTGGAGCCCAATGGGGAATATATG
||||||||   ||||  | || || | | || | | ||  ||||  | | | || |||||| |  ||  |          |||||  |  ||     |  || |||| || |||||||||||| | |||||||| || || ||||| || ||||| || ||||| ||||| || || ||||||||||| ||||||||||| ||||
gtgagtttattacttattacaatgctctggtattaatgcattgtggtgc-tttgcttttgaagttttgttgatgagcaactgattacagttatgtatttctgtagGCTGTTAAGAAGCTTGGTCTCTGGGGTCTATTCACTCGTGGACTGCCCCTACGTATTGTCATGATCGGTACCCTTACTGGAGCTCAATGGGGAATTTATG

upper sequence: GLYMA19G27380.1 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os04g37600.1 (Oryza sativa), 3'ss of exon 4
gtgagtttcagacttggtgcatgtttagtg-tcattgttttgtattacatc-tgtttttgacgagtttctttgattttatatactatataatgcagGCGGTGAAGAAGCTTGGTTTGTGGGGTCTCTTTACGCGTGGTCTCCCCCTCCGAATTGTTATGATTGGAACTCTTACTGGAGCCCAATGGGGAATATATG
                  | | |||| ||  |||   |    | ||   |   || ||||  |  ||| ||  ||||  | |   || ||   ||||| ||||| ||||||||| |||||||||| ||||||||||| |||||  | || || || ||||| || ||||| |||||||| || |||||| | ||||
------------------gtaagttttgtaatcaccataccatcttctgtaacgtgtttgttggatttatt--atttcttgttgcattta---cagGCTGTGAATAAGCTTGGTATGTGGGGTCTATTTACGCGTGGACTCCCTTTGCGTATCGTGATGATCGGTACTCTCACTGGAGCGCAGTGGGGACTCTATG

upper sequence: GLYMA19G27380.1 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os02g52860.1 (Oryza sativa), 3'ss of exon 4
gtgagtttcagacttggtgcatgtttagtgtcat-tgttttgtattacatc--tgtttttgacgagtttctttgattt---tatatactatataat-gcagGCGGTGAAGAAGCTTGGTTTGTGGGGTCTCTTTACGCGTGGTCTCCCCCTCCGAATTGTTATGATTGGAACTCTTACTGGAGCCCAATGGGGAATATATG
 |  |    |      |   || | | |  |||  | |  ||||||  ||   |||| ||  |  |||  ||  || |   | | |  | ||| ||  ||||| || || ||||||||| | ||||| || || ||  | || || ||||| || |||||||||||||||||||||||||| || |||||||| || ||||
-tatggcgaaagtcctgcatatatatggaatcaagtctcatgtattctattcatgttcttatcatgttaattgaatgtacatgtttgttgtattatcacagGCTGTTAAAAAGCTTGGTCTTTGGGGCCTTTTCACTAGAGGACTGCCCCTTCGTATTGTTATGATTGGAACTCTTACTGGTGCTCAATGGGGTATTTATG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207679443|gb|GD662119.1|GD662119
EST:     ATAATCTTGTCTCTTTTCTGAACAATGCAAAAGGAGCAACAGTTGGTGAT                         GCGGTGAAGAAGCTTGGTTTGTGGGGTCTCTTTACGCGTGGTC
genomic: ATAATCTTGTCTCTTTTCTGAACAATGCAAAAGGAGCAACAGTTGGTGATgtgagtttca ... tataatgcagGCGGTGAAGAAGCTTGGTTTGTGGGGTCTCTTTACGCGTGGTC
EST: gi|10845648|gb|BF068722.1|BF068722
EST:     TAATCTTGTCTTTTTTCTGAACAATGCAAAAAGAGCAACTAGT-GGTGAT                         GCTGTGAAGAAGCTTGGCTTGTGG
genomic: TAATCTTGTCTCTTTTCTGAACAATGCAAAAGGAGCAAC-AGTTGGTGATgtgagtttca ... tataatgcagGCGGTGAAGAAGCTTGGTTTGTGG
EST: gi|298168584|gb|HO009514.1|HO009514
EST:     ATAATCTTGTCTCTTTTCTGAACAATGCAAAAGGAGCAACAGTTGGTGAT                         GCGGTGAAGAAGCTTGGTTTGTGGGGTCTCTTTACGCGTGGTCTCCCCCTC
genomic: ATAATCTTGTCTCTTTTCTGAACAATGCAAAAGGAGCAACAGTTGGTGATgtgagtttca ... tataatgcagGCGGTGAAGAAGCTTGGTTTGTGGGGTCTCTTTACGCGTGGTCTCCCCCTC
EST: gi|213596228|gb|DB981816.1|DB981816
EST:     GAACAATGCAAAAGGAGCAACAGTTGGTGAT                         GCGGTGAAGAAGCTTGGTTTGTGGGGTCTCTTTACGCGTCGTTTCCCCTTT
genomic: GAACAATGCAAAAGGAGCAACAGTTGGTGATgtgagtttca ... tataatgcagGCGGTGAAGAAGCTTGGTTTGTGGGGTCTCTTTACGCGTGGTCTCCCCCTC
EST: gi|192295707|gb|FG990561.1|FG990561
EST:     ATAATCTTGTCTCTTTTCTGAACAATGCAAAAGGAGCAACAGTTGGTGAT                         GCGGTGAAGAAGCTTGGTTTGTGGGGTCTCTTTACGCGTGGTCTCCCCCTC
genomic: ATAATCTTGTCTCTTTTCTGAACAATGCAAAAGGAGCAACAGTTGGTGATgtgagtttca ... tataatgcagGCGGTGAAGAAGCTTGGTTTGTGGGGTCTCTTTACGCGTGGTCTCCCCCTC
EST: gi|213597197|gb|DB981589.1|DB981589
EST:     GAACAATGCAAAAGGAGCAACAGTTGGTGAT                         GCGGTGAAGAAGCTTGGTTTGTGGGGTCTCTTTACGCCTGGTCTCCCCCTC
genomic: GAACAATGCAAAAGGAGCAACAGTTGGTGATgtgagtttca ... tataatgcagGCGGTGAAGAAGCTTGGTTTGTGGGGTCTCTTTACGCGTGGTCTCCCCCTC
EST: gi|22927800|gb|BU544939.1|BU544939
EST:     ACAATGCAAAAGGAGCAACAGTTGGTGAT                         GCGGTGAAGAAGCTTGGTTTGTGGGGTCTCTTTACGCGTGGTCTNNNNNNN
genomic: ACAATGCAAAAGGAGCAACAGTTGGTGATgtgagtttca ... tataatgcagGCGGTGAAGAAGCTTGGTTTGTGGGGTCTCTTTACGCGTGGTCTCCCCCTC
EST: gi|58024028|gb|CX710769.1|CX710769
EST:     ATAATCTTGTCTCTTTTCTGAACAATGCAAAAGGAGCAACAGTTGGTGAT                         GCGGTGAAGAAGCTTGGTTTGTGGGGTCTCTTTACGCGTGGTCTCCCCCTC
genomic: ATAATCTTGTCTCTTTTCTGAACAATGCAAAAGGAGCAACAGTTGGTGATgtgagtttca ... tataatgcagGCGGTGAAGAAGCTTGGTTTGTGGGGTCTCTTTACGCGTGGTCTCCCCCTC
EST: gi|254314924|gb|GR829917.1|GR829917
EST:     ATAATCTTGTCTCTTTTCTGAACAATGCAAAAGGAGCAACAGTTGGTGAT                         GCGGTGAAGAAGCTTGGTTTGTGGGGTCTCTTTACGCGTGGTCTCCCCCTC
genomic: ATAATCTTGTCTCTTTTCTGAACAATGCAAAAGGAGCAACAGTTGGTGATgtgagtttca ... tataatgcagGCGGTGAAGAAGCTTGGTTTGTGGGGTCTCTTTACGCGTGGTCTCCCCCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtattacatctgtttttgacgagtttctttgattttatatactatataatgcagGCGGTGAAGAAGCTTGGTTTGTGGGGTCTCTTTACGCGTGGTCTCCCCCTCCGAATTGTTATGATTGGAACTCTTACTGGAGCCCAATGGGGAATATATG
                      agtttctttgatttta  TA-rich tract