1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...tttgaatgaatattcctatataatattcaagttgattttctgtagctgcacatcaattaaagatggacaaaaatctcaccttccccacccaatttggcagCTACATCATTCAGGAGGTCAAGCTTGCAACTTCTAACACCATTATTGGAAGCGTTGCCCAATCCACTCTCTCCTGGCCTGCCTAACATTCTCAGGTCGAC
species | Glycine max |
transcript | GLYMA19G27200.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGCGGCACTTAACCCTGATATTGATCTTGTTCTAATTTTGGCGAACCCAG CTACATCATTCAGGAGGTCAAGCTTGCAACTTCTAACACCATTATTGGAAGEST: gi|209709677|gb|BW657206.1|BW657206
genomic: TGCGGCACTTAACCCTGATATTGATCTTGTTCTAATTTTGGCGAACCCAGgtaactttta ... aatttggcagCTACATCATTCAGGAGGTCAAGCTTGCAACTTCTAACACCATTATTGGAAG
EST: TGCGGCACTTAACCCTGATATTGATCTTGTTCTAATTTTGGCGAACCCAG CTACATCATTC
genomic: TGCGGCACTTAACCCTGATATTGATCTTGTTCTAATTTTGGCGAACCCAGgtaactttta ... aatttggcagCTACATCATTC
ctgcacatcaattaaagatggacaaaaatctcaccttccccacccaatttggcagCTACATCATTCAGGAGGTCAAGCTTGCAACTTCTAACACCATTATTGGAAGCGTTGCCCAATCCACTCTCTCCTGGCCTGCCTAACATTCTCAGGTCGAC
atctcac putative branch site (score: 3)
atcaattaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttgaatgaatattcctatataatattcaagttgattttctgtagctgcacatcaattaaagatggacaaaaatctcaccttccccacccaatttggcagCTACATCATTCAGGAGGTCAAGCTTGCAACTTCTAACACCATTATTGGAAGCGTTGCCCAATCCACTCTCTCCTGGCCTGCCTAACATTCTCAGGTCGAC
- tgaatga
- - - - - - - - - - - - - - - - - - - - -gtagctg
- - - - - - - - - - - - - - - - - - - - - - - - cacatca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acaaaaa