Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgaaggaatattgctattttaaactaaaaagaatcattccatgacattgatttgtccctgttggtttctgtcattgatggagtggaatttgttattgttattggatattgcagACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCAAGAATCAAACAAAGAATGAATGTGCAAAATAGGTAGGTTTTGGTGTGCC

Basic information

species Glycine max
transcript GLYMA19G25870.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10237175|gb|BE806063.1|BE806063
EST:     TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAG                         ACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
genomic: TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAGgtatgaagga ... gatattgcagACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
EST: gi|213588131|gb|DB979209.1|DB979209
EST:     GCATCATTTA-GACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAG                         ACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
genomic: GCATCA-TTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAGgtatgaagga ... gatattgcagACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
EST: gi|254346377|gb|GR856099.1|GR856099
EST:     TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAG                         ACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
genomic: TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAGgtatgaagga ... gatattgcagACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
EST: gi|21678397|gb|BQ630748.1|BQ630748
EST:     TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAG                         ACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
genomic: TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAGgtatgaagga ... gatattgcagACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
EST: gi|192317683|gb|FK009023.1|FK009023
EST:     TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAG                         ACCCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
genomic: TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAGgtatgaagga ... gatattgcagACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
EST: gi|254324154|gb|GR836279.1|GR836279
EST:     TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAG                         ACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
genomic: TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAGgtatgaagga ... gatattgcagACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
EST: gi|208271560|gb|GE071828.1|GE071828
EST:     CGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAG                         ACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
genomic: CGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAGgtatgaagga ... gatattgcagACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
EST: gi|7234612|gb|AW569948.1|AW569948
EST:     TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAG                         ACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
genomic: TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAGgtatgaagga ... gatattgcagACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
EST: gi|19935119|gb|BQ080149.1|BQ080149
EST:     TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAG                         ACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA
genomic: TGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGTCAGTTCCAGAGgtatgaagga ... gatattgcagACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttggtttctgtcattgatggagtggaatttgttattgttattggatattgcagACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCAAGAATCAAACAAAGAATGAATGTGCAAAATAGGTAGGTTTTGGTGTGCC
             cattgat  putative branch site (score: 4)
                           aatttgttattgttat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatgaaggaatattgctattttaaactaaaaagaatcattccatgacattgatttgtccctgttggtttctgtcattgatggagtggaatttgttattgttattggatattgcagACTCTGGATCTGTTGGACCTATGTGAACAAGCTGGTTCAGCAGCATAAGCAAGAATCAAACAAAGAATGAATGTGCAAAATAGGTAGGTTTTGGTGTGCC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA