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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagtagaatataggactttgaaatggtggagaccatgtatgagcttatctgtaaatcaatgaataaaacaaaaaatttgtgcctcctcttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTCAGGCCAGTATTGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGT

Basic information

species Glycine max
transcript GLYMA19G25870.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G25870.1 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os05g41930.1 (Oryza sativa), 3'ss of exon 4
gtagtagaatataggactttgaaatggtggagaccatgtatgagcttatctgtaaatcaat----gaataaaacaaaaaatttgtgcc-tcctcttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTCAGGCCAGTATTGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGT
                    | ||||||     |   |  || | |||| | | | | | |    |  | |  ||   |  || |||  |  || | ||  ||||| || |||||  | || |||||||||||| | |||||||| ||| ||||||| |||||  |||| ||||| || || ||||||||||||||||| || |
--------------------gtaatggttacagctg-gcgtgtgtttatttctcatttacttttggtttcatgcactgatattctgctatattcattctactagGTGAGGATCCGCATTAGAAAGCTCTGCAAGCCTTTGGAAGAGGATGCTTTCAGACCAGTGCTGCACCATTACGATGGTCCAAAGTTTCGTCTTGAGCTCT

upper sequence: GLYMA19G25870.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G033117_T01 (Zea mays), 3'ss of exon 4
gtagtagaatataggactttgaaatggtggagaccatgtatgagcttatctgtaaatcaatga---ataaaacaaaaaatttgtgcctcctcttccttgt-agGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTCAGGCCAGTATTGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGT
                    | | ||||  | | ||| | | |     |   |   ||| |      | |  |       |   |  ||||   || ||| |||| || ||| |  | |||||||| |||||| | |||||||| ||||| ||||||||||| ||||| |||||||| ||||||||||| || ||||| || |
--------------------gtactggta-acatcatttgtcattacgttcattcctcatttccttttgattccttgctctgacgtttccttcaccatgttagGTGAGGATCTGCATTAGGAAGCTGTGCAAGCCGTTGGAAGAGGATTCCTTCAGGCCAGTTTTGCACCATTATGATGGGCCAAAGTTCCGCCTTGAGCTCT

upper sequence: GLYMA19G25870.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G011923_T01 (Zea mays), 3'ss of exon 4
gtagtagaatataggactttgaaatggtggagaccatgtatgagcttatctgtaaatcaatgaataaaacaaaaaatttgtgcctcctcttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTCAGGCCAGTATTGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGT
                        |  ||   || || | | |   | |   |   |||     |            |    |  | || || |   |||| || ||||| || |||||||| |||||| | |||||||| ||||| ||||||||||| ||||| || ||||| || ||||||||||| || || || |
-----------------------gtactgataac-atctgtcattatgtgcatttctcatctcctttggtttcttgctctgacaccttcatcatgtcagGTGAGGATCCGCGTTAGGAAGCTGTGCAAGCCGTTGGAAGAGGATTCCTTCAGGCCAGTTTTGCACCACTATGATGGCCCAAAGTTTCGCCTCGAGCTCT

upper sequence: GLYMA19G25870.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv14s0068g02040.t01 (Vitis vinifera), 3'ss of exon 4
gtagtagaatataggactttgaaatggtggagaccatgtatgagcttatctgtaaatcaatgaataaaacaaaaaatttgtgcctcctcttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTCAGGCCAGTATTGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGT
   ||| |||||    | ||||     || |   | |  || | | |       | ||  | | | |  || |  ||||     ||  |       |||||||| |||||||| ||||| || |||||||||||||| |||||| |||| ||||| ||  ||||||| ||||| || || ||||| || ||||| || |
---gtaaaatat----cattgatgaactgaaacacttaaattatcattctcaagactcccttactgagtcatagtattt-catttctcccaataaatagGTAAGGATCCGTGTTAGGAACCTATGCAAGGCATTGGAGGAAGATGCTTTTAGGCCTGTCCTGCATCACTATGATGGACCTAAGTTCCGCCTTGAGCTTT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|57574688|gb|CX547663.1|CX547663
EST:     CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAG                         GTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
genomic: CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAGgtagtagaat ... ttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
EST: gi|193664031|gb|FK609941.1|FK609941
EST:     CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAG                         GTAAGAATCCGTGTCAGGAAGCTACTAGCAAGGCATTGGAAGAAGATTCTT
genomic: CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAGgtagtagaat ... ttccttgtagGTAAGAATCCGTGTCAGGAAGCT-CT-GCAAGGCATTGGAAGAAGATTCTT
EST: gi|7285096|gb|AW597583.1|AW597583
EST:     CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAG                         GTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
genomic: CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAGgtagtagaat ... ttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
EST: gi|6726683|gb|AW311047.1|AW311047
EST:     CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAG                         GTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
genomic: CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAGgtagtagaat ... ttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
EST: gi|23734098|gb|BU765269.1|BU765269
EST:     GCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAG                         GTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
genomic: GCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAGgtagtagaat ... ttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
EST: gi|14205633|gb|BG839311.1|BG839311
EST:     CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAG                         GTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
genomic: CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAGgtagtagaat ... ttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
EST: gi|16345270|gb|BI970865.1|BI970865
EST:     CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAG                         GTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
genomic: CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAGgtagtagaat ... ttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
EST: gi|298165387|gb|HO011436.1|HO011436
EST:     CTGCCTGGGAGGATAAAAAATGC-AAGGGGAATCAAGGTTTCCAGCTCAG                         GTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
genomic: CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAGgtagtagaat ... ttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
EST: gi|11275143|gb|BF325466.1|BF325466
EST:     CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAG                         GTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
genomic: CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAGgtagtagaat ... ttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
EST: gi|208279500|gb|GE080875.1|GE080875
EST:     CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAG                         GTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
genomic: CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAGgtagtagaat ... ttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
EST: gi|254340597|gb|GR850899.1|GR850899
EST:     CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAG                         GTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
genomic: CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAGgtagtagaat ... ttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
EST: gi|31308502|gb|CD393705.1|CD393705
EST:     CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAG                         GTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
genomic: CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAGgtagtagaat ... ttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
EST: gi|15286212|gb|BI470103.1|BI470103
EST:     CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAG                         GTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
genomic: CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAGgtagtagaat ... ttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
EST: gi|14991766|gb|BI317439.1|BI317439
EST:     CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAG                         GTAAGAATCCGTGTCAGGAAGCTCTGCAAGGAATTGGAAGAAAATTCTTTC
genomic: CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAGgtagtagaat ... ttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
EST: gi|10237029|gb|BE805917.1|BE805917
EST:     CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAG                         GTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
genomic: CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAGgtagtagaat ... ttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
EST: gi|6482567|gb|AW201818.1|AW201818
EST:     CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAG                         GTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
genomic: CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAGgtagtagaat ... ttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
EST: gi|15200000|gb|BI424118.1|BI424118
EST:     CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAG                         GTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
genomic: CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAGgtagtagaat ... ttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
EST: gi|16996811|gb|BM086183.1|BM086183
EST:     CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAG                         GTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
genomic: CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAGgtagtagaat ... ttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
EST: gi|15663461|gb|BI700832.1|BI700832
EST:     CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAG                         GTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
genomic: CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAGgtagtagaat ... ttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
EST: gi|7233125|gb|AW568475.1|AW568475
EST:     CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAG                         GTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
genomic: CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAGgtagtagaat ... ttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
EST: gi|192334782|gb|FK025273.1|FK025273
EST:     CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAG                         GTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
genomic: CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAGgtagtagaat ... ttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
EST: gi|254339779|gb|GR857904.1|GR857904
EST:     CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAG                         GTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
genomic: CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAGgtagtagaat ... ttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
EST: gi|7234612|gb|AW569948.1|AW569948
EST:     AGGTTTCCAGCTCAG                         GTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
genomic: AGGTTTCCAGCTCAGgtagtagaat ... ttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
EST: gi|254335019|gb|GR844804.1|GR844804
EST:     CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAG                         GTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
genomic: CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAGgtagtagaat ... ttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
EST: gi|8283592|gb|BE021151.1|BE021151
EST:     CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAG                         GTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
genomic: CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAGgtagtagaat ... ttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
EST: gi|192304166|gb|FG993492.1|FG993492
EST:     CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCGGCTCAG                         GTAAGAATCCGTGTCAGGAAGTTTTGCAAGGCATTGGAAGAAGATTCTTTC
genomic: CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAGgtagtagaat ... ttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
EST: gi|4289775|gb|AI437974.1|AI437974
EST:     CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAG                         GTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
genomic: CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAGgtagtagaat ... ttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
EST: gi|7693250|gb|AW761345.1|AW761345
EST:     CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAG                         GTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
genomic: CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAGgtagtagaat ... ttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
EST: gi|15337153|gb|BI497809.1|BI497809
EST:     CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAG                         GTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
genomic: CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAGgtagtagaat ... ttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
EST: gi|10237175|gb|BE806063.1|BE806063
EST:     AAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAG                         GTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
genomic: AAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAGgtagtagaat ... ttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
EST: gi|16105386|gb|BI893126.1|BI893126
EST:     CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAG                         GTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
genomic: CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAGgtagtagaat ... ttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
EST: gi|58019845|gb|CX706587.1|CX706587
EST:     CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAG                         GTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
genomic: CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAGgtagtagaat ... ttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
EST: gi|192299947|gb|FG991807.1|FG991807
EST:     CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAG                         GTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
genomic: CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAGgtagtagaat ... ttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
EST: gi|192316546|gb|FK009315.1|FK009315
EST:     CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAG                         GTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC
genomic: CTGCCTGGGAGGATAAAAAATGCAAAGGGGAATCAAGGTTTCCAGCTCAGgtagtagaat ... ttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttatctgtaaatcaatgaataaaacaaaaaatttgtgcctcctcttccttgtagGTAAGAATCCGTGTCAGGAAGCTCTGCAAGGCATTGGAAGAAGATTCTTTCAGGCCAGTATTGCATCATTATGACGGGCCAAAGTTTCGTCTTGAACTGT
                                tttgtgcctcctcttc  CT-rich tract
      tgtaaatcaatgaata  TA-rich tract