1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...catgctctaaacttctacatttaagcatcatagttcaacttgctataaatcgtataccattctaattgatatatgtaatctgaaacattaattacattagGGGATTCACAAGACAGGAGGGAGGAAATTTGGGGTTCTTAACCAGTCAGCTTTGGGTTGTATTCCATTGGTCAAGGCACTATTAAATGGATCTAAAGGTT
species | Glycine max |
transcript | GLYMA19G23450.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTGAGAAATATGTCGACATGGTAGTTGGTAACCTTACAACTGTGATCAAG GGGATTCACAAGACAGGAGGGAGGAAATTTGGGGTTCTTAACCAGTCAGCTEST: gi|14205629|gb|BG839307.1|BG839307
genomic: CTGAGAAATATGTCGACATGGTAGTTGGTAACCTTACAACTGTGATCAAGgtatatattt ... attacattagGGGATTCACAAGACAGGAGGGAGGAAATTTGGGGTTCTTAACCAGTCAGCT
EST: CTGAGAAATATGTCGACATGGTAGTTGGTAACCTTACAACTGTGATCAAG GGGATTCACAAGACAGGAGGGAGGAAATTTGGGGTTCTTAACCAGTCAGCTEST: gi|151405502|gb|EV275316.1|EV275316
genomic: CTGAGAAATATGTCGACATGGTAGTTGGTAACCTTACAACTGTGATCAAGgtatatattt ... attacattagGGGATTCACAAGACAGGAGGGAGGAAATTTGGGGTTCTTAACCAGTCAGCT
EST: CTGAGAAATATGTCGACATGGTAGTTGGTAACCTTACAACTGTGATCAAG GGGATTCACAAGACAGGAGGGAGGAAATTTGGGGTTCTTAACCAGTCAGCT
genomic: CTGAGAAATATGTCGACATGGTAGTTGGTAACCTTACAACTGTGATCAAGgtatatattt ... attacattagGGGATTCACAAGACAGGAGGGAGGAAATTTGGGGTTCTTAACCAGTCAGCT
taaatcgtataccattctaattgatatatgtaatctgaaacattaattacattagGGGATTCACAAGACAGGAGGGAGGAAATTTGGGGTTCTTAACCAGTCAGCTTTGGGTTGTATTCCATTGGTCAAGGCACTATTAAATGGATCTAAAGGTT
attctaattgatatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catgctctaaacttctacatttaagcatcatagttcaacttgctataaatcgtataccattctaattgatatatgtaatctgaaacattaattacattagGGGATTCACAAGACAGGAGGGAGGAAATTTGGGGTTCTTAACCAGTCAGCTTTGGGTTGTATTCCATTGGTCAAGGCACTATTAAATGGATCTAAAGGTT
catgctc
- - - - - -cttctac
- - - - - - - - - - - - - - - - - - - cttgcta