1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ttgtctgttgtgtaagagaaatactttgtaccagattctaaattaatttcattgtcactaggtttcttatgcctgcttcacagtatttttttatatgcagCATGCAGGAATATTTCACATGGCTGTCAGTTGTTGGGCCCTTTTAACATTTGGGCCTCAAGTTTGCAAAGGCTATGGTTCATTTACATTTTTCTTGATCT
species | Glycine max |
transcript | GLYMA19G06130.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATTTGATCATGGTTGGAGAATGGTGGAGGCTTGTAACACCAATGTTTCTG CATGCAGGAATATTTCACATGGCTGTCAGTTGTTGGGCCCTTTTAACATTTEST: gi|120533919|gb|EH262052.1|EH262052
genomic: ATTTGATCATGGTTGGAGAATGGTGGAGGCTTGTAACACCAATGTTTCTGgtacacaatt ... ttatatgcagCATGCAGGAATATTTCACATGGCTGTCAGTTGTTGGGCCCTTTTAACATTT
EST: ATTTGATCATGGTTGGAGAATGGTGGAGGCTTGTAACACCAATGTTTCTG CATGCAGGAATATTTCACATGGCTGTCAGTTGTTGGGCCCTTTTAACATTT
genomic: ATTTGATCATGGTTGGAGAATGGTGGAGGCTTGTAACACCAATGTTTCTGgtacacaatt ... ttatatgcagCATGCAGGAATATTTCACATGGCTGTCAGTTGTTGGGCCCTTTTAACATTT
atttcattgtcactaggtttcttatgcctgcttcacagtatttttttatatgcagCATGCAGGAATATTTCACATGGCTGTCAGTTGTTGGGCCCTTTTAACATTTGGGCCTCAAGTTTGCAAAGGCTATGGTTCATTTACATTTTTCTTGATCT
aattaat putative branch site (score: 3)
tattttttt putative PPT
acagtatttttttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgtctgttgtgtaagagaaatactttgtaccagattctaaattaatttcattgtcactaggtttcttatgcctgcttcacagtatttttttatatgcagCATGCAGGAATATTTCACATGGCTGTCAGTTGTTGGGCCCTTTTAACATTTGGGCCTCAAGTTTGCAAAGGCTATGGTTCATTTACATTTTTCTTGATCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- -tctgttg
- - - - - - - - -gaaatac
- - - - - - - - - - - - - - - - - - - - - - - - - - tgtcact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgcttc