1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...catatgtttaccagtggtaatttaagagtcttaagttccattatgaaaagctaattatgattactgttatctgacactatgtggaactttacttttgcagACTCAGTTCATGCTGGACCAGTTAGCTGATCTTCAGAATAAG
species | Glycine max |
transcript | GLYMA19G04320.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGCTTGAGCGGCAACTGGATTCATCTCTCAAGCAAGTGAGGTCCACAAAG ACTCAGTTCATGCTGGACCAGTTAGCTGATCTTCAGAATAAGGAGCATEST: gi|192308196|gb|FK002736.1|FK002736
genomic: AGCTTGAGCGCCAACTGGATTCATCTCTTAAGCAAGTGAGGTCAACAAAGgtaataaaat ... acttttgcagACTCAGTTCATGCTGGACCAGTTAGCTGATCTTCAGAATAAGGAGCAT
EST: TAAGCAAGTGAGGTCAACAAAG ACTCAGTTCATGCTGGACCAGTTAGCTGATCTTCAGAATAAGEST: gi|193537347|gb|FK495838.1|FK495838
genomic: TAAGCAAGTGAGGTCAACAAAGgtaataaaat ... acttttgcagACTCAGTTCATGCTGGACCAGTTAGCTGATCTTCAGAATAAG
EST: AGCTTGAGCGCCAACTGGATTCATCTCTTAAGCAAGTGAGGTCAACAAAG ACTCAGTTCATGCTGGACCAGTTAGCTGATCTTCAGAATAAGGAGCEST: gi|193528213|gb|FK487747.1|FK487747
genomic: AGCTTGAGCGCCAACTGGATTCATCTCTTAAGCAAGTGAGGTCAACAAAGgtaataaaat ... acttttgcagACTCAGTTCATGCTGGACCAGTTAGCTGATCTTCAGAATAAGGAGC
EST: AGCTTGAGCGCCAACTGGATTCATCTCTTAAGCAAGTGAGGTCAACAA-G ACTCAGTTCATGCTGGACCAGTTAGCTGATCTTCAGAATAGGEST: gi|208148465|gb|GD951131.1|GD951131
genomic: AGCTTGAGCGCCAACTGGATTCATCTCTTAAGCAAGTGAGGTCAACAAAGgtaataaaat ... acttttgcagACTCAGTTCATGCTGGACCAGTTAGCTGATCTTCAGAATAAG
EST: AGCTTGAGCGCCAACTGGATTCATCTCTTAAGCAAGTGAGGTCAACAAAG ACTCAGTTCATGCTGGACCAGTTAGCTGATCTTCAGAATAAGEST: gi|193665950|gb|FK611337.1|FK611337
genomic: AGCTTGAGCGCCAACTGGATTCATCTCTTAAGCAAGTGAGGTCAACAAAGgtaataaaat ... acttttgcagACTCAGTTCATGCTGGACCAGTTAGCTGATCTTCAGAATAAG
EST: CGCCAACTGGATTCATCTCTTAAGCAAGTGAGGTCAACAAAG ACTCAGTTCATGCTGGACCAGTTAGCTGATCTTCAGAATAAGEST: gi|208197576|gb|GD999805.1|GD999805
genomic: CGCCAACTGGATTCATCTCTTAAGCAAGTGAGGTCAACAAAGgtaataaaat ... acttttgcagACTCAGTTCATGCTGGACCAGTTAGCTGATCTTCAGAATAAG
EST: AGCTTGAGCGCCAACTGGATTCATCTCTTAAGCAAGTGAGGTCAACAAAG ACTCAGTTCATGCTGGACCAGTTAGCTGATCTTCAGAATAAGEST: gi|18733553|gb|BM527677.1|BM527677
genomic: AGCTTGAGCGCCAACTGGATTCATCTCTTAAGCAAGTGAGGTCAACAAAGgtaataaaat ... acttttgcagACTCAGTTCATGCTGGACCAGTTAGCTGATCTTCAGAATAAG
EST: AGCTTGAGCGCCAACTGGATTCATCTCTTAAGCAAGTGAGGTCAACAAAG ACTCAGTTCATGCTGGACCAGTTAGCTGATCTTCAGAATAAGEST: gi|193719958|gb|FK650454.1|FK650454
genomic: AGCTTGAGCGCCAACTGGATTCATCTCTTAAGCAAGTGAGGTCAACAAAGgtaataaaat ... acttttgcagACTCAGTTCATGCTGGACCAGTTAGCTGATCTTCAGAATAAG
EST: CGCCAACTGGATTCATCTCTTAAGCAAGTGAGGTCAACAAAG ACTCAGTTCATGCAGGACCAGTTAGCTGATCTTCAGAATAAG
genomic: CGCCAACTGGATTCATCTCTTAAGCAAGTGAGGTCAACAAAGgtaataaaat ... acttttgcagACTCAGTTCATGCTGGACCAGTTAGCTGATCTTCAGAATAAG
aaaagctaattatgattactgttatctgacactatgtggaactttacttttgcagACTCAGTTCATGCTGGACCAGTTAGCTGATCTTCAGAATAAG
atctgac putative branch site (score: 3)
ctttactttt putative PPT
taattatgattact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catatgtttaccagtggtaatttaagagtcttaagttccattatgaaaagctaattatgattactgttatctgacactatgtggaactttacttttgcagACTCAGTTCATGCTGGACCAGTTAGCTGATCTTCAGAATAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT