1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ggaccaaaatgggtatttacccttcaccttatgtagaccagtcgatgcgtataattttagatggttgaacttaatgtgtttcatcggatcttcaatccagGTGCACAGTTTGCTTGGCTGAAGAAAGATCTGCAAAGTGTAGACCGTAGTGTAACCCCTTGGTTAGTAGCTGCATGGCATTCTCCTTGGTATAACAGTTA
species | Glycine max |
transcript | GLYMA19G03220.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
tgcgtataattttagatggttgaacttaatgtgtttcatcggatcttcaatccagGTGCACAGTTTGCTTGGCTGAAGAAAGATCTGCAAAGTGTAGACCGTAGTGTAACCCCTTGGTTAGTAGCTGCATGGCATTCTCCTTGGTATAACAGTTA
acttaat putative branch site (score: 4)
tcttc putative PPT
ataattttagat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggaccaaaatgggtatttacccttcaccttatgtagaccagtcgatgcgtataattttagatggttgaacttaatgtgtttcatcggatcttcaatccagGTGCACAGTTTGCTTGGCTGAAGAAAGATCTGCAAAGTGTAGACCGTAGTGTAACCCCTTGGTTAGTAGCTGCATGGCATTCTCCTTGGTATAACAGTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- accaaaa
- - - - - - - - - - -cttcacc
- - - - - - - - - - - - - - -tatgtag
- - - - - - - - - - - - - - - - - - - - - cgatgcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatggtt