1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtatgttttcctttaattttaggttttcaattcatatttatcaattatgttggttcttaatagtgggcataattaattattagtggcttcttgttagGTTTATGATAAATGGGGAGATGTCATTTGTCATGGTGACCAAAAGGTCATAAAGGAAGGATACAAGAGTTTCCCAAGTGGTCATACTTCAG
species | Glycine max |
transcript | GLYMA18G53100.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTCGANNNCGACCAGACNNCNTCTGGCGATGTTTTCCAGATGGAAAGGAT GTTTATGATAAATGGGGAGATGTCATTTGTCATGGTGACCAAAAGGTCATAEST: gi|192294776|gb|FG986625.1|FG986625
genomic: GTCGACCTCGACCAGACTTCTTCTGGCGATGTTTTCCAGATGGAAAGGATgtatgttttc ... ttcttgttagGTTTATGATAAATGGGGAGATGTCATTTGTCATGGTGACCAAAAGGTCATA
EST: GTCGACCTCGACCAGACTTCTTCTGGCGATGTTTTCCAGATGGAAAGGAT GTTTATGATAAATGGGGAGATGTCATTTGTCATGGTGACCAAAAG-TCATAEST: gi|18040504|gb|BM308798.1|BM308798
genomic: GTCGACCTCGACCAGACTTCTTCTGGCGATGTTTTCCAGATGGAAAGGATgtatgttttc ... ttcttgttagGTTTATGATAAATGGGGAGATGTCATTTGTCATGGTGACCAAAAGGTCATA
EST: GTCGACCTCGACCAGACTTCTTCTGGCGATGTTTTCCAGATGGAAAGGAT GTTTATGATAAATGGGGAGATGTCATTTGTCATGGTGACCAAA-GGTCATA
genomic: GTCGACCTCGACCAGACTTCTTCTGGCGATGTTTTCCAGATGGAAAGGATgtatgttttc ... ttcttgttagGTTTATGATAAATGGGGAGATGTCATTTGTCATGGTGACCAAAAGGTCATA
aattatgttggttcttaatagtgggcataattaattattagtggcttcttgttagGTTTATGATAAATGGGGAGATGTCATTTGTCATGGTGACCAAAAGGTCATAAAGGAAGGATACAAGAGTTTCCCAAGTGGTCATACTTCAG
aattaat putative branch site (score: 3)
cttcttgtt putative PPT
ataattaattattagt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgttttcctttaattttaggttttcaattcatatttatcaattatgttggttcttaatagtgggcataattaattattagtggcttcttgttagGTTTATGATAAATGGGGAGATGTCATTTGTCATGGTGACCAAAAGGTCATAAAGGAAGGATACAAGAGTTTCCCAAGTGGTCATACTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA