1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gctatgagatcttaataatagaatctctcttctattcagatattggtttacaaaaatccatattttgagaaaatatgacatttgaaaatgtggttttttaGGCCACACTACAGTGTTAATATGACTGCAGTTCAAGTTGGCCATGCTTTCCTTAGTCTATCAACAGATACATCAACACAAGGAGACAGAAAAGGGACAAT
species | Glycine max |
transcript | GLYMA18G51920.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGGGCATGTTGTGCAACCTAAAGTAAACATGACTCCATTATTACCAGACC AGCCACACTACAGTGTTAATATGACTGCAGTTCAAGTTGGCCATGCTTTCCEST: gi|17023874|gb|BM094908.1|BM094908
genomic: TGGGCATGTTGTGCAACCTAAAGTAAACATGACTCCATTATTACCAGACCagtatgccat ... tggttttttaGGCCACACTACAGTGTTAATATGACTGCAGTTCAAGTTGGCCATGCTTTCC
EST: TGGGCATGTTGTGCAACCTAAAGTAAACATGACTCCATTATTACCAGACC AGCCACACTACAGTGTTAATATGACTGCAGTTCAAGTTGGCCATGCTTTCCEST: gi|6915558|gb|AW397088.1|AW397088
genomic: TGGGCATGTTGTGCAACCTAAAGTAAACATGACTCCATTATTACCAGACCagtatgccat ... tggttttttaGGCCACACTACAGTGTTAATATGACTGCAGTTCAAGTTGGCCATGCTTTCC
EST: CTAAAGTAAACATGACTCCATTATTACCAGACC AGCCACACTACAGTGTTAATATGACTGCAGTTCAAGTTGGCCATGCTTTCC
genomic: CTAAAGTAAACATGACTCCATTATTACCAGACCagtatgccat ... tggttttttaGGCCACACTACAGTGTTAATATGACTGCAGTTCAAGTTGGCCATGCTTTCC
gtttacaaaaatccatattttgagaaaatatgacatttgaaaatgtggttttttaGGCCACACTACAGTGTTAATATGACTGCAGTTCAAGTTGGCCATGCTTTCCTTAGTCTATCAACAGATACATCAACACAAGGAGACAGAAAAGGGACAAT
tttttt CT-rich tract
atattttgagaaaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctatgagatcttaataatagaatctctcttctattcagatattggtttacaaaaatccatattttgagaaaatatgacatttgaaaatgtggttttttaGGCCACACTACAGTGTTAATATGACTGCAGTTCAAGTTGGCCATGCTTTCCTTAGTCTATCAACAGATACATCAACACAAGGAGACAGAAAAGGGACAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
-ctatgag
- - - - - - - - - - - - - - - -ctattca
- - - - - - - - - - - - - - - - - - - - - - - - -acaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agaaaata