1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...caatgtgtgcattctatttctttatgggtaagctaaaggctgcactagaagatggagtataatgaatcatgacatttatttatttttattttggtgtaggTGATGGTATTTGATGAAACGACTGATTGAAAATGTTTATGTCGTGGATGATACCAACAACAGAGGAAAGCAAATATAAAATATAGACATTGTGAATACAT
species | Glycine max |
transcript | GLYMA18G50950.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TATTTATGAGTGGATGGAAAGAAGTGACAACTGTCCCGTTTGTGGGAAGG TGATGGTATTTGATGAAACGACTGATTGAAAATGTTTATGTCGTGGATGATEST: gi|208132794|gb|GD927801.1|GD927801
genomic: TATTTATGAGTGGATGGAAAGAAGTGACAACTGTCCCGTTTGTGGGAAGGtaatattttc ... ttggtgtaggTGATGGTATTTGATGAAACGACTGATTGAAAATGTTTATGTCGTGGATGAT
EST: TATTTATGAGTGGATGGAAAGAAGTGACAACTGTCCCGTTTGTGGGAAGG TGATGGTATTTGATGAAACGACTGATTGAAAATGTTTATGTCGTGGATGATEST: gi|17401377|gb|BM178159.1|BM178159
genomic: TATTTATGAGTGGATGGAAAGAAGTGACAACTGTCCCGTTTGTGGGAAGGtaatattttc ... ttggtgtaggTGATGGTATTTGATGAAACGACTGATTGAAAATGTTTATGTCGTGGATGAT
EST: TATTTATGAGTGGATGGAAAGAAGTGACAACTGTCCCGTTTGTGGGAAGG TGATGGTATTTGATGAAACGEST: gi|58022273|gb|CX709014.1|CX709014
genomic: TATTTATGAGTGGATGGAAAGAAGTGACAACTGTCCCGTTTGTGGGAAGGtaatattttc ... ttggtgtaggTGATGGTATTTGATGAAACG
EST: TATTTATGAGTGGATGGAAAGAAGTGACAACTGTCCCGTTTGTGGGAAGG TGATGGTATTTGATGAAACGACTGATTGAAAATGTTTATGTCGTGGATGATEST: gi|21677338|gb|BQ629689.1|BQ629689
genomic: TATTTATGAGTGGATGGAAAGAAGTGACAACTGTCCCGTTTGTGGGAAGGtaatattttc ... ttggtgtaggTGATGGTATTTGATGAAACGACTGATTGAAAATGTTTATGTCGTGGATGAT
EST: TATTTATGAGTGGATGGAAAGAAGTGACAACTGTCCCGTTTGTGGGAAGG TGATGGTATTTGATGAAACGACTGATTGAAAATGTTTATGTCGTGGATGATEST: gi|19271176|gb|BM887432.1|BM887432
genomic: TATTTATGAGTGGATGGAAAGAAGTGACAACTGTCCCGTTTGTGGGAAGGtaatattttc ... ttggtgtaggTGATGGTATTTGATGAAACGACTGATTGAAAATGTTTATGTCGTGGATGAT
EST: TATTTATGAGTGGATGGAAAGAAGTGACAACTGTCCCGTTTGTGGGAAGG TGATGGTATTTGATGAAACGACTGATTGAAAATGTTTATGTCGTGGATGAT
genomic: TATTTATGAGTGGATGGAAAGAAGTGACAACTGTCCCGTTTGTGGGAAGGtaatattttc ... ttggtgtaggTGATGGTATTTGATGAAACGACTGATTGAAAATGTTTATGTCGTGGATGAT
tagaagatggagtataatgaatcatgacatttatttatttttattttggtgtaggTGATGGTATTTGATGAAACGACTGATTGAAAATGTTTATGTCGTGGATGATACCAACAACAGAGGAAAGCAAATATAAAATATAGACATTGTGAATACAT
tttatttttatttt CT-rich tract
agtataatgaatcatg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caatgtgtgcattctatttctttatgggtaagctaaaggctgcactagaagatggagtataatgaatcatgacatttatttatttttattttggtgtaggTGATGGTATTTGATGAAACGACTGATTGAAAATGTTTATGTCGTGGATGATACCAACAACAGAGGAAAGCAAATATAAAATATAGACATTGTGAATACAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
caatgtg
- - - - gcattct
- - - - - - - - - - - - - - - - - - - - tgcacta
- - - - - - - - - - - - - - - - - - - - - - - - - gatggag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcatgac