1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tttgtatcctttaatttttcactactgtgtaattttcttaagaaaagcttattgtgactccttttggttacttggcactgtctgaaaaaccaatttgcagACACAATTCATGCTGGACCAGTTATCTGATCTTCAAACCAAG
species | Glycine max |
transcript | GLYMA18G50900.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATCTTGAACGGCAATTGGATTCATCTCTAAAGCAAGTGAGGTCCACAAAG ACACAATTCATGCTGGACCAGTTATCTGATCTTCAAACTAAGEST: gi|8401582|gb|BE057146.1|BE057146
genomic: ATCTTGAACGGCAATTGGATTCATCTCTAAAGCAAGTGAGGTCCACAAAGgtaataatgg ... caatttgcagACACAATTCATGCTGGACCAGTTATCTGATCTTCAAACCAAG
EST: ATCTTGAACGGCAATTGGATTCATCTCTAAAGCAAGTGAGGTCCACAAAG ACACAATTCATGCTGGACCAGTTATCTGATCTTCAAACCAAG
genomic: ATCTTGAACGGCAATTGGATTCATCTCTAAAGCAAGTGAGGTCCACAAAGgtaataatgg ... caatttgcagACACAATTCATGCTGGACCAGTTATCTGATCTTCAAACCAAG
agcttattgtgactccttttggttacttggcactgtctgaaaaaccaatttgcagACACAATTCATGCTGGACCAGTTATCTGATCTTCAAACCAAG
tgaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttgtatcctttaatttttcactactgtgtaattttcttaagaaaagcttattgtgactccttttggttacttggcactgtctgaaaaaccaatttgcagACACAATTCATGCTGGACCAGTTATCTGATCTTCAAACCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - actactg
- - - - - - - - - - - - - - - - - - - -aagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgtctg