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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

tgagtgcaaaagttctcatgtttcttaaggtatcttgctgttgcattaatgtattgactgttctgactatgataacactgaatacagaAAGAGCATTTTGCCATTAGGGAAAGGAAAAATCCCGAGGATCCAATTGATTGTAATGATCTCAAGTCAATGAGGTTTACTCGTGCGG

Basic information

species Glycine max
transcript GLYMA18G50790.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31476522|gb|CD418550.1|CD418550
EST:     CTCCATGATCATCCCAAAGTTCTTGAAGAAATCAGAA                         AAGAGCATTTTGCCATTAGGGAAAGGAAAAATCCCGAGGATCCAATTGATT
genomic: CTCCATGATCATCCCAAAGTTCTTGAAGAAATCAGAGtgagtgcaaa ... tgaatacagaAAGAGCATTTTGCCATTAGGGAAAGGAAAAATCCCGAGGATCCAATTGATT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttgctgttgcattaatgtattgactgttctgactatgataacactgaatacagaAAGAGCATTTTGCCATTAGGGAAAGGAAAAATCCCGAGGATCCAATTGATTGTAATGATCTCAAGTCAATGAGGTTTACTCGTGCGG
                                    tgataac  putative branch site (score: 2)
           attaatgtatt  TA-rich tract