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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggtttccacgactcagtgtactgtgaattccttctagcttctaaattgtgcactcatatatttcctttctgtgtggttacagTCCAGATACACCACATTTGGCATCAGTTGTTGCTGGCTCTGGGAAGAATAACTTTTCACCTTTGGTTCAATGTACTAGACATATGTGCCCAGTCCGTATC

Basic information

species Glycine max
transcript GLYMA18G50760.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8827739|gb|BE211469.1|BE211469
EST:     TGTGCATGTGGCTGCCAAAGTAACTCGTCTCGGTCAGGGACCTGTGTAGA                         TCCAGATACACCACATTTGGCATCAGTTGTTGCTGGCTCTGGGAAGAATAA
genomic: TGTGCATGTGGCTGCCAAAGTAACTCGTCTCGGTCAGGGACCTGTGTAGAgtaggtttcc ... gtggttacagTCCAGATACACCACATTTGGCATCAGTTGTTGCTGGCTCTGGGAAGAATAA
EST: gi|6071984|gb|AW101371.1|AW101371
EST:     AGTAACTCGTCTCGGTCAGGGACCTGTGTAGA                         TCCAGATACACCACATTTGGCATCAGTTGTTGCTGGCTCTGGGAAGAATAA
genomic: AGTAACTCGTCTCGGTCAGGGACCTGTGTAGAgtaggtttcc ... gtggttacagTCCAGATACACCACATTTGGCATCAGTTGTTGCTGGCTCTGGGAAGAATAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttccttctagcttctaaattgtgcactcatatatttcctttctgtgtggttacagTCCAGATACACCACATTTGGCATCAGTTGTTGCTGGCTCTGGGAAGAATAACTTTTCACCTTTGGTTCAATGTACTAGACATATGTGCCCAGTCCGTATC
           ttctaaa  putative branch site (score: 2)
                                 tttcctttctgtgt  putative PPT
                          tcatatattt  TA-rich tract