Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...acaaattttcaatctaaagcattttgagactaatattcactgttaatttatattccaatatcattttgtgttcatcagagttaatatgttctacgtaacaGGGTTTGGTGTCATTATCACTATCGTCTTACATATTCCTACTGAAGCCAAGTGGTTGTGGAAATAAAGAGTTACCATGTGGATCACACTCATCATACCAA

Basic information

species Glycine max
transcript GLYMA18G49470.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254316096|gb|GR825905.1|GR825905
EST:     TACTGGGGAAGGTACATGACCTGTGCCATCTTCCAGGTCATATTTGTTAT                         TGGTTTGGTGTCATTATCACTATCGTCTTACATATTCCTACTGAAGCCAAG
genomic: TACTGGGGAAGGTACATGACCTGTGCCATCTTCCAGGTCATATTTGTTATtgtaagtagt ... ctacgtaacaGGGTTTGGTGTCATTATCACTATCGTCTTACATATTCCTACTGAAGCCAAG
EST: gi|254348280|gb|GR851959.1|GR851959
EST:     ATGACCTGTGCCATCTTCCAGGTCATATTTGTTAT                         TGGTTTGGTGTCATTATCACTATCGTCTTACATATTCCTACTGAAGCCAAG
genomic: ATGACCTGTGCCATCTTCCAGGTCATATTTGTTATtgtaagtagt ... ctacgtaacaGGGTTTGGTGTCATTATCACTATCGTCTTACATATTCCTACTGAAGCCAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttatattccaatatcattttgtgttcatcagagttaatatgttctacgtaacaGGGTTTGGTGTCATTATCACTATCGTCTTACATATTCCTACTGAAGCCAAGTGGTTGTGGAAATAAAGAGTTACCATGTGGATCACACTCATCATACCAA
           aatatcatttt  TA-rich tract