1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tgttacttcagagatatgacctccgatgaagtattattgtattataactagttgttattttctccttgctgacttctggtggattgtacttctgtccagtTTTTCAGGAGGTTCCATGCCGCATATGTAGATGCAGTTTCAAACCCATTCCATGTACCAGGCAAAAAGATAACCTCCAGAACTTTTGCAGAAAGAGTGAG
species | Glycine max |
transcript | GLYMA18G48290.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGTAAGGAATT TTTTCAGGAGGTTCCATGCCGCATATGTAGATGCAGTTTCAAACCCATTCCEST: gi|58018197|gb|CX704939.1|CX704939
genomic: TGTAAGGAATGtgagtatgga ... tctgtccagtTTTTCAGGAGGTTCCATGCCGCATATGTAGATGCAGTTTCAAACCCATTCC
EST: TATCTTGGTGACCACGGATCTGGATGTTAAAGATGCGGATGTAAGGAATT TTTTCAGGAGGTTCCATGCCGCATATGTAGATGCAGTTTCAAACCCATTCCEST: gi|298181124|gb|HO022563.1|HO022563
genomic: TATCTTGGTGACCACGGATCTGGATGTTAAAGATGCGGATGTAAGGAATGtgagtatgga ... tctgtccagtTTTTCAGGAGGTTCCATGCCGCATATGTAGATGCAGTTTCAAACCCATTCC
EST: TATCTTGGTGACCACGGATCTGGATGTTAAAGATGCGGATGTAAGGAATT TTTTCAGGAGGTTCCATGCCGCATATGTAGATGCAGTTTCAAACCCATTCCEST: gi|208181550|gb|GD974159.1|GD974159
genomic: TATCTTGGTGACCACGGATCTGGATGTTAAAGATGCGGATGTAAGGAATGtgagtatgga ... tctgtccagtTTTTCAGGAGGTTCCATGCCGCATATGTAGATGCAGTTTCAAACCCATTCC
EST: TATCTTGGTGACCACGGATCTGGATGTTAAAGATGCGGATGTAAGGAATT TTTTCAGGAGGTTCCATGCCGCATATGTAGATGCAGTTTCAAACCCATTCCEST: gi|31475033|gb|CD417061.1|CD417061
genomic: TATCTTGGTGACCACGGATCTGGATGTTAAAGATGCGGATGTAAGGAATGtgagtatgga ... tctgtccagtTTTTCAGGAGGTTCCATGCCGCATATGTAGATGCAGTTTCAAACCCATTCC
EST: TATCTTGGTGACCACGGATCTGGATGTTAAAGATGCGGATGTAAGGAATT TTTTCAGGAGGTTCCATGCCGCATATGTAGATGCAGTTTCAAACCCATTCCEST: gi|208329997|gb|GE129814.1|GE129814
genomic: TATCTTGGTGACCACGGATCTGGATGTTAAAGATGCGGATGTAAGGAATGtgagtatgga ... tctgtccagtTTTTCAGGAGGTTCCATGCCGCATATGTAGATGCAGTTTCAAACCCATTCC
EST: TCTTGGTTGTACCACGGATCTGGATGTTAAAGATGCGGATGTAAGGAATT TTTTCAGGAGGTTCCATGCCGCATATGTAGATGCAGTTTCAAACCCATTCCEST: gi|207749325|gb|GD719567.1|GD719567
genomic: TCTTGG-TG-ACCACGGATCTGGATGTTAAAGATGCGGATGTAAGGAATGtgagtatgga ... tctgtccagtTTTTCAGGAGGTTCCATGCCGCATATGTAGATGCAGTTTCAAACCCATTCC
EST: AATCTTGGTGACCACGGATCTGGATGTTAAAGATGCGGATGTAAGGAATT TTTTCAGGAGGTTCCATGCCGCATATGTAGATGCAGTTTCAAACCCATTCCEST: gi|207792010|gb|GD766016.1|GD766016
genomic: -ATCTTGGTGACCACGGATCTGGATGTTAAAGATGCGGATGTAAGGAATGtgagtatgga ... tctgtccagtTTTTCAGGAGGTTCCATGCCGCATATGTAGATGCAGTTTCAAACCCATTCC
EST: TATCTTGGTGACCACGGATCTGGATGTTAAAGATGCGGATGTAAGGAATT TTTTCAGGAGGTTCCATGCCGCATATGTAGATGCAGTTTCAAACCCATTCCEST: gi|207746089|gb|GD717815.1|GD717815
genomic: TATCTTGGTGACCACGGATCTGGATGTTAAAGATGCGGATGTAAGGAATGtgagtatgga ... tctgtccagtTTTTCAGGAGGTTCCATGCCGCATATGTAGATGCAGTTTCAAACCCATTCC
EST: GACCACGGATCTGGTTATTGTTAAAGATGCGGATGTAAGGAATT TTTTCAGGAGGTTCCATGCCGCATATGTAGATGCAGTTTCAAACCCATTCCEST: gi|298163727|gb|HO012460.1|HO012460
genomic: GACCACGGATCTGG--A-TGTTAAAGATGCGGATGTAAGGAATGtgagtatgga ... tctgtccagtTTTTCAGGAGGTTCCATGCCGCATATGTAGATGCAGTTTCAAACCCATTCC
EST: TATCTTGGTGACCACGGATCTGGATGTTAAAGATGCGGATGTAAGGAATT TTTTCAGGAGGTTCCATGCCGCATATGTAGATGCAGTTTCAAACCCATTCC
genomic: TATCTTGGTGACCACGGATCTGGATGTTAAAGATGCGGATGTAAGGAATGtgagtatgga ... tctgtccagtTTTTCAGGAGGTTCCATGCCGCATATGTAGATGCAGTTTCAAACCCATTCC
aactagttgttattttctccttgctgacttctggtggattgtacttctgtccagtTTTTCAGGAGGTTCCATGCCGCATATGTAGATGCAGTTTCAAACCCATTCCATGTACCAGGCAAAAAGATAACCTCCAGAACTTTTGCAGAAAGAGTGAG
tgctgac putative branch site (score: 2)
cttctgtcc putative PPT
ttgttatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgttacttcagagatatgacctccgatgaagtattattgtattataactagttgttattttctccttgctgacttctggtggattgtacttctgtccagtTTTTCAGGAGGTTCCATGCCGCATATGTAGATGCAGTTTCAAACCCATTCCATGTACCAGGCAAAAAGATAACCTCCAGAACTTTTGCAGAAAGAGTGAG
- - - - - - - - - -cctccga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctgact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggtgga