1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tacaattgcttctaggaaagcttacacctaaactggcccgttacttgtttgtttgccatggtaattattgctcatgttgtgccatcacacaactttgtagGCTTGGTCTAGGTGCAAAAGTTTCACGCCAATCAAAATTTGTGCCTTCAGATGACCCTGTTGAAAGGAAATTGTATGCCAAGTTGAATGCTGAAAAAAGA
species | Glycine max |
transcript | GLYMA18G46720.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GATGCAGATGATGATAGAACAAATGCGGANG-AGAGGGTCGACCTTCTAG GCTTGGTCTAGGTGCAAAAGTTTCACGCCAATCAAAATTTGTGCCTTCAGAEST: gi|193533324|gb|FK491086.1|FK491086
genomic: GATGCAGATGATGATAGAACAAATGCGGATGTAGAGGGTCGACCTTCTAGgtcagtatat ... aactttgtagGCTTGGTCTAGGTGCAAAAGTTTCACGCCAATCAAAATTTGTGCCTTCAGA
EST: GATGCAGATGATGATAGAACAAATGCGGATGTAGAGGGTCGACCTTCTAG GCTTGGTCTAGGTGCAAAAGTTTCACGCCAATCAAAATTTGTGCCTTCAGAEST: gi|151405453|gb|EV275267.1|EV275267
genomic: GATGCAGATGATGATAGAACAAATGCGGATGTAGAGGGTCGACCTTCTAGgtcagtatat ... aactttgtagGCTTGGTCTAGGTGCAAAAGTTTCACGCCAATCAAAATTTGTGCCTTCAGA
EST: GATGCAGATGATGATAGAACAAATGCGGATGTAGAGGGTCGACCTTCTAG GCTTGGTCTAGGTGCAAAAGTTTCACGCCAATCAAAATTTGTGCCTTCAGA
genomic: GATGCAGATGATGATAGAACAAATGCGGATGTAGAGGGTCGACCTTCTAGgtcagtatat ... aactttgtagGCTTGGTCTAGGTGCAAAAGTTTCACGCCAATCAAAATTTGTGCCTTCAGA
tgtttgtttgccatggtaattattgctcatgttgtgccatcacacaactttgtagGCTTGGTCTAGGTGCAAAAGTTTCACGCCAATCAAAATTTGTGCCTTCAGATGACCCTGTTGAAAGGAAATTGTATGCCAAGTTGAATGCTGAAAAAAGA
taattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacaattgcttctaggaaagcttacacctaaactggcccgttacttgtttgtttgccatggtaattattgctcatgttgtgccatcacacaactttgtagGCTTGGTCTAGGTGCAAAAGTTTCACGCCAATCAAAATTTGTGCCTTCAGATGACCCTGTTGAAAGGAAATTGTATGCCAAGTTGAATGCTGAAAAAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG