Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tatcttggctatttgttacatttaagacacaagagatattactttaaatttctatataactataattatagaagactaatgtgaactatcaacttgcaggTTTGTCAAATGAAGTTCACCATGCTGATGTCATAGCTTTGACAAAGG

Basic information

species Glycine max
transcript GLYMA18G46610.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13481736|gb|BG511079.1|BG511079
EST:     GATAATCATCCAGAGTTTCAATTGAAAAGATATGACTATTTTGGTTTTGG                         TTTGTCAAATGAAGTTCACCATGCTGATGTCATAGCTTTGACAAAGC
genomic: GATAATCATCCAGAGTTTCAATTGAAAAGATATGACTATTTTGGTTTTGGtaataaactt ... aacttgcaggTTTGTCAAATGAAGTTCACCATGCTGATGTCATAGCTTTGACAAAGG
EST: gi|192299097|gb|FG990411.1|FG990411
EST:     GATAATCATCCAGAGTTTCAATTGAAAAGATATGACTATTTTGGTTTTGG                         TTTGTCAAATGAAGTTCACCATGCTGATGTCATAGCTTTGACAAAGC
genomic: GATAATCATCCAGAGTTTCAATTGAAAAGATATGACTATTTTGGTTTTGGtaataaactt ... aacttgcaggTTTGTCAAATGAAGTTCACCATGCTGATGTCATAGCTTTGACAAAGG
EST: gi|7285538|gb|AW598025.1|AW598025
EST:     GATAATCATCCAGAGTTTCAATTGAAAAGATATGACTATTTTGGTTTTGG                         TTTGTCAAATGAAGTTCACCATGCTGATGTCATAGCTTTGACAAAGC
genomic: GATAATCATCCAGAGTTTCAATTGAAAAGATATGACTATTTTGGTTTTGGtaataaactt ... aacttgcaggTTTGTCAAATGAAGTTCACCATGCTGATGTCATAGCTTTGACAAAGG
EST: gi|192328575|gb|FK023565.1|FK023565
EST:     GATAATCATCCAGAGTTTCAATTGAAAAGATATGACTATTTTGGTTTTGG                         TTTGTCAAATGAAGTTCACCATGCTGATGTCATAGCTTTGACAAAGC
genomic: GATAATCATCCAGAGTTTCAATTGAAAAGATATGACTATTTTGGTTTTGGtaataaactt ... aacttgcaggTTTGTCAAATGAAGTTCACCATGCTGATGTCATAGCTTTGACAAAGG
EST: gi|12490017|gb|BG043538.1|BG043538
EST:     GATAATCATCCAGAGTTTCAATTGAAAAGATATGACTATTTTGGTTTTGG                         TTTGTCAAATGAAGTTCACCATGCTGATGTCATAGCTTTGACAAAGC
genomic: GATAATCATCCAGAGTTTCAATTGAAAAGATATGACTATTTTGGTTTTGGtaataaactt ... aacttgcaggTTTGTCAAATGAAGTTCACCATGCTGATGTCATAGCTTTGACAAAGG
EST: gi|254319562|gb|GR829074.1|GR829074
EST:     GATAATCATCCAGAGTTTCAATTGAAAAGATATGACTATTTTGGTTTTGG                         TTTGTCAAATGAAGTTCACCATGCTGATGTCATAGCTTTGACAAAGC
genomic: GATAATCATCCAGAGTTTCAATTGAAAAGATATGACTATTTTGGTTTTGGtaataaactt ... aacttgcaggTTTGTCAAATGAAGTTCACCATGCTGATGTCATAGCTTTGACAAAGG
EST: gi|17401910|gb|BM178692.1|BM178692
EST:     GATAATCATCCAGAGTTTCAATTGAAAAGATATGACTATTTTGGTTTTGG                         TTTGTCAAATGAAGTTCACCATGCTGATGTCATAGCTTTGACAAAGC
genomic: GATAATCATCCAGAGTTTCAATTGAAAAGATATGACTATTTTGGTTTTGGtaataaactt ... aacttgcaggTTTGTCAAATGAAGTTCACCATGCTGATGTCATAGCTTTGACAAAGG
EST: gi|192295537|gb|FG988111.1|FG988111
EST:     GATAATCATCCAGAGTTTCAATTGAAAAGATATGACTATTTTGGTTTTGG                         TTTGTCAAATGAAGTTCACCATGCTGATGTCATAGCTTTGACAAAGC
genomic: GATAATCATCCAGAGTTTCAATTGAAAAGATATGACTATTTTGGTTTTGGtaataaactt ... aacttgcaggTTTGTCAAATGAAGTTCACCATGCTGATGTCATAGCTTTGACAAAGG
EST: gi|19453234|gb|BM954644.1|BM954644
EST:     GATAATCATCCAGAGTTTCAATTGAAAAGATATGACTATTTTGGTTTTGG                         TTTGTCAAATGAAGTTCACCATGCTGATGTCATAGCTTTGACAAAGC
genomic: GATAATCATCCAGAGTTTCAATTGAAAAGATATGACTATTTTGGTTTTGGtaataaactt ... aacttgcaggTTTGTCAAATGAAGTTCACCATGCTGATGTCATAGCTTTGACAAAGG
EST: gi|11413618|gb|BF425629.1|BF425629
EST:     GATAATCATCCAGAGTTTCAATTGAAAAGATATGACTATTTTGGTTTTGG                         TTTGTCAAATGAAGTTCACCATGCTGATGTCATAGCTTTGACAAAGC
genomic: GATAATCATCCAGAGTTTCAATTGAAAAGATATGACTATTTTGGTTTTGGtaataaactt ... aacttgcaggTTTGTCAAATGAAGTTCACCATGCTGATGTCATAGCTTTGACAAAGG
EST: gi|298178438|gb|HO024173.1|HO024173
EST:     GATAATCATCCAGAGTTTCAATTGAAAAGATACGACTATTTTGGTTTTGG                         TTTGTCAAATGAAGTTCACCATGCTGATGTCATAGCTTTGACAAAGC
genomic: GATAATCATCCAGAGTTTCAATTGAAAAGATATGACTATTTTGGTTTTGGtaataaactt ... aacttgcaggTTTGTCAAATGAAGTTCACCATGCTGATGTCATAGCTTTGACAAAGG
EST: gi|192298436|gb|FG988452.1|FG988452
EST:     GATAATCATCCAGAGTTTCAATTGAAAAGATATGACTATTTTGGTTTTGG                         TTTGTCAAATGAAGTTCACCATGCTGATGTCATAGCTTTGACAAAGC
genomic: GATAATCATCCAGAGTTTCAATTGAAAAGATATGACTATTTTGGTTTTGGtaataaactt ... aacttgcaggTTTGTCAAATGAAGTTCACCATGCTGATGTCATAGCTTTGACAAAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaatttctatataactataattatagaagactaatgtgaactatcaacttgcaggTTTGTCAAATGAAGTTCACCATGCTGATGTCATAGCTTTGACAAAGG
                            gactaat  putative branch site (score: 2)
       tatataactataatta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tatcttggctatttgttacatttaagacacaagagatattactttaaatttctatataactataattatagaagactaatgtgaactatcaacttgcaggTTTGTCAAATGAAGTTCACCATGCTGATGTCATAGCTTTGACAAAGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - agacaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgaac