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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgaactctaagaacatttctccttttttttcatctttgtttgattttcctaatatcttgttgaatttttttttcagTCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAG

Basic information

species Glycine max
transcript GLYMA18G46140.3
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G46140.3 (Glycine max), 3'ss of exon 4
lower sequence: Vv15s0048g01890.t01 (Vitis vinifera), 3'ss of exon 3
gtatgtgaactctaagaacatttctccttttttttcatctttgtttgattttcctaatatcttgttgaa-----tttttttttcagTCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAG
    || || | |        ||     ||| ||| |   |  | ||||| |  |  | ||||  | ||     | ||| || |||||||| |||||  || | |||||||||||||||||||||||| | ||||||||||| ||  ||||||||||  ||
----gtaaatttttgc--tgattaaatgtttctttaacaatcttctgattctttttgtgtctttctaaacattgtgtttgttgcagTCCAAAAATGCGTTATTATCCACTTTCTTGTTTCTTGATCAAATCGTGTGGCTTGGTAGGTCAGGCATCTATAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14992012|gb|BI317685.1|BI317685
EST:     CCTAATTCTGTTGGGAAAG                         TCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: CCTAATTCTGTTGGGAAAGgtatgtgaac ... tttttttcagTCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|15815736|gb|BI788011.1|BI788011
EST:     TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAG                         TCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAGgtatgtgaac ... tttttttcagTCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|58019988|gb|CX706730.1|CX706730
EST:     ATTCTGTTGGGAAAG                         TCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: ATTCTGTTGGGAAAGgtatgtgaac ... tttttttcagTCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|11412081|gb|BF424092.1|BF424092
EST:     TAAGTCCAACACCACAGGGCACTCCCCTCCTCCTAATTCTGTTGGGAAAG                         TCCAAGAATGCACTACTCTCCACTNTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAGgtatgtgaac ... tttttttcagTCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|22523238|gb|BU082049.1|BU082049
EST:     TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAG                         TCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAGgtatgtgaac ... tttttttcagTCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|15001018|gb|BI321832.1|BI321832
EST:     TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAG                         TCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAGgtatgtgaac ... tttttttcagTCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|298169267|gb|HO020627.1|HO020627
EST:     TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAG                         TCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAGgtatgtgaac ... tttttttcagTCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|7926421|gb|AW832447.1|AW832447
EST:     TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAG                         TCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAGgtatgtgaac ... tttttttcagTCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|58017723|gb|CX704465.1|CX704465
EST:     TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAG                         TCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAGgtatgtgaac ... tttttttcagTCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|7284130|gb|AW596728.1|AW596728
EST:     TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAG                         TCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAGgtatgtgaac ... tttttttcagTCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|23052758|gb|BU577249.1|BU577249
EST:     TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAG                         TCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAGgtatgtgaac ... tttttttcagTCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|7691215|gb|AW759346.1|AW759346
EST:     TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAG                         TCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAGgtatgtgaac ... tttttttcagTCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|19347697|gb|BM892485.1|BM892485
EST:     CCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAG                         TCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: CCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAGgtatgtgaac ... tttttttcagTCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|13251950|gb|BG362853.1|BG362853
EST:     TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAG                         TCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAGgtatgtgaac ... tttttttcagTCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|58023442|gb|CX710183.1|CX710183
EST:     CCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGGNT-GGAAAG                         TCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: CCAACACCACAGGGCACTCCCCTCCCCCTAATTCT-GTTGGGAAAGgtatgtgaac ... tttttttcagTCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|22523317|gb|BU082128.1|BU082128
EST:     TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAG                         TCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAGgtatgtgaac ... tttttttcagTCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|7926211|gb|AW832237.1|AW832237
EST:     CCCTCCCCCTAATTCTGTTGGGAAAG                         TCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: CCCTCCCCCTAATTCTGTTGGGAAAGgtatgtgaac ... tttttttcagTCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|58023678|gb|CX710419.1|CX710419
EST:     TAAGTCCAACACCACAGGGCACTCCCCTCCCCNTAATTCTGTTGGGAAAG                         TCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAGgtatgtgaac ... tttttttcagTCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|7796633|gb|AW782030.1|AW782030
EST:     TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAG                         TCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAGgtatgtgaac ... tttttttcagTCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|58014395|gb|CX701137.1|CX701137
EST:     TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAG                         TCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAGgtatgtgaac ... tttttttcagTCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|6482692|gb|AW201929.1|AW201929
EST:     TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAG                         TCCAAGAATGCACTACTCTCCACTTTCTTGTTTCT
genomic: TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAGgtatgtgaac ... tttttttcagTCCAAGAATGCACTACTCTCCACTTTCTTGTTTCT
EST: gi|15663457|gb|BI700828.1|BI700828
EST:     TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAG                         TCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAGgtatgtgaac ... tttttttcagTCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|209698252|gb|BW678023.1|BW678023
EST:     TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAG                         TCCAAGAATGCAC--CTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAGgtatgtgaac ... tttttttcagTCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|15814527|gb|BI786802.1|BI786802
EST:     TAAGTCCAACACCACATGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAG                         TCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAGgtatgtgaac ... tttttttcagTCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|151412092|gb|EV281904.1|EV281904
EST:     TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAG                         TCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAGgtatgtgaac ... tttttttcagTCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|9564862|gb|BE474371.1|BE474371
EST:     TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAG                         TCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAGgtatgtgaac ... tttttttcagTCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|58023559|gb|CX710300.1|CX710300
EST:     TAAGTCCAACACCACAGGGCACTCCCCTCCCCNTAATTCTGTTGGGAAAG                         TCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAGgtatgtgaac ... tttttttcagTCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|18725662|gb|BM523624.1|BM523624
EST:     TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAG                         TCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAGgtatgtgaac ... tttttttcagTCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|27809248|gb|CB063670.1|CB063670
EST:     TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAG                         TCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAGgtatgtgaac ... tttttttcagTCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|120530703|gb|EH258836.1|EH258836
EST:     TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAG                         TCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAGgtatgtgaac ... tttttttcagTCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|4395943|gb|AI494940.1|AI494940
EST:     TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAG                         TCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAGgtatgtgaac ... tttttttcagTCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|16348826|gb|BI974421.1|BI974421
EST:     TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAG                         TCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAGgtatgtgaac ... tttttttcagTCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|13481238|gb|BG510581.1|BG510581
EST:     TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAG                         TCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAGgtatgtgaac ... tttttttcagTCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|27446046|gb|CA953169.1|CA953169
EST:     TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAG                         TCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: TAAGTCCAACACCACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAGgtatgtgaac ... tttttttcagTCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
EST: gi|15661823|gb|BI699194.1|BI699194
EST:     ACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAG                         TCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG
genomic: ACAGGGCACTCCCCTCCCCCTAATTCTGTTGGGAAAGgtatgtgaac ... tttttttcagTCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttttttttcatctttgtttgattttcctaatatcttgttgaatttttttttcagTCCAAGAATGCACTACTCTCCACTTTCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAG
                         tcctaat  putative branch site (score: 2)
                                           tttttttttc  putative PPT
                            taatatcttgttgaat  TA-rich tract