1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aatattttaatgatcctgtttgtgtaaccctctgcaccttcatttataactccaacaactgctttacataataatttctgagtaaaattcctaatgaacaGGAAAATCGGCTACAGAAATTCAAGCTTCCAGAACCTGTGCTTTGTATTGGGGGCTTCTTGCAGATTGAGCTTTTGGGAAGGATACAAAGACAAGAAATG
species | Glycine max |
transcript | GLYMA18G46130.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATGGACCTATACTTCCCCTGAGTTTCCAATGAATAA GGAAAATCGGCTACAGAAATTCAAGCTTCCAGAACCTGTGCTTTGTATTGGEST: gi|7233782|gb|AW569125.1|AW569125
genomic: ATGGACCTATACTTCCCCTGAGTTTCCAATGTCTAAggtatttaac ... ctaatgaacaGGAAAATCGGCTACAGAAATTCAAGCTTCCAGAACCTGTGCTTTGTATTGG
EST: GATGAAATGTTTGTATGGACCTATACTTCCCCTGAGTTTCCAATGTCTAA GGAAAATCGGCTACAGAAATTCAAGCTTCCAGAACCTGTGCTTTGTATEST: gi|254330882|gb|GR842147.1|GR842147
genomic: GATGAAATGTTTGTATGGACCTATACTTCCCCTGAGTTTCCAATGTCTAAggtatttaac ... ctaatgaacaGGAAAATCGGCTACAGAAATTCAAGCTTCCAGAACCTGTGCTTTGTAT
EST: GATGAAATGTTTGTATGGACCTATACTTCCCCTGAGTTTCCAATGTCTAA GGAAAATCGGCTACAGAAATTCAAGCTTCCAGAACCTGTGCTTTGTATTGG
genomic: GATGAAATGTTTGTATGGACCTATACTTCCCCTGAGTTTCCAATGTCTAAggtatttaac ... ctaatgaacaGGAAAATCGGCTACAGAAATTCAAGCTTCCAGAACCTGTGCTTTGTATTGG
ataactccaacaactgctttacataataatttctgagtaaaattcctaatgaacaGGAAAATCGGCTACAGAAATTCAAGCTTCCAGAACCTGTGCTTTGTATTGGGGGCTTCTTGCAGATTGAGCTTTTGGGAAGGATACAAAGACAAGAAATG
tcctaat putative branch site (score: 2)
ttcct CT-rich tract
tttacataataatttc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatattttaatgatcctgtttgtgtaaccctctgcaccttcatttataactccaacaactgctttacataataatttctgagtaaaattcctaatgaacaGGAAAATCGGCTACAGAAATTCAAGCTTCCAGAACCTGTGCTTTGTATTGGGGGCTTCTTGCAGATTGAGCTTTTGGGAAGGATACAAAGACAAGAAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - tgtttgt
- - - - - - - - - - - - - - -ctctgca
- - - - - - - - - - - - - - - - - - ccttcat
- - - - - - - - - - - - - - - - - - - - - - - - - -ccaacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttctgag