Sequence
atgc intronic sequence ATGC exonic sequence...gatacttattaacatttgtcataaattcattttatacgaagaattatgattggataatagtataaatatgaaacttattgcatggacttgtgttatgcagGCTGGCACCTAAAGTGGTGACTGTGGTGGAGCAGGACCTAAGCAACACTGGTTCATTCTTGGGGAGGTTTGTGGAAGCCATACACTACTACTCAGCATTA
Basic information
species | Glycine max |
transcript | GLYMA18G45220.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA18G45220.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G131516_T02 (Zea mays), 3'ss of exon 1
gatacttattaacatttgtcataaattcattttata-cgaagaattatgattggat-aatagtataaatatgaaacttattgcatggacttgtgttatgcagGCTGGCACCTAAAGTGGTGACTGTGGTGGAGCAGGACCTAAGCAACACTGGTTCATTCTTGGGGAGGTTTGTGGAAGCCATACACTACTACTCAGCATTA
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--gacagacagggattcggaatcgaatggctagctggtgacaaatcgcacggggattaataaactacattggtcattgattccatcccccacacacctgcagGCTGGCCCCCAAGGTGGTGACAATGGTGGAGCAGGACCTGAGCCACTCGGGCTCCTTCCTGGCGCGCTTCGTGGAGGCCATCCACTACTACTCGGCGCTG
upper sequence: GLYMA18G45220.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv08s0056g00050.t01 (Vitis vinifera), 3'ss of exon 1
gatacttattaacatttgtcataaa--ttcattttatacgaagaattatgattggataatagtataaatatgaaacttattgcatggacttgtgttatgcagGCTGGCACCTAAAGTGGTGACTGTGGTGGAGCAGGACCTAAGCAACACTGGTTCATTCTTGGGGAGGTTTGTGGAAGCCATACACTACTACTCAGCATTA
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catattcgctcgtcccagtcaaagagataaacattacgttatcatttgtgttcggttttt--tttccctctgaaactcacttcatctgctaatgagtttcagATTAGCACCAAAAGTGGTGACTGTTGTAGAGCAAGACCTGAGCCACGCCGGCTCCTTCTTGGGAAGGTTCGTGGAGGCCATACATTACTACTCGGCGCTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|8284342|gb|BE021901.1|BE021901EST: CTCTATGATGTCACTGGCTCAGACACCAACACCTTGTGGCTCTTGCAGAG GCTGGCACCTAAAGTGGTGACTGTGGTGGAGCAGGACCTAAGCAACACTGG
genomic: CTCTATGATGTCACTGGCTCAGACACCAACACCTTGTGGCTCTTGCAGAGgtaggtgaag ... tgttatgcagGCTGGCACCTAAAGTGGTGACTGTGGTGGAGCAGGACCTAAGCAACACTGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atgattggataatagtataaatatgaaacttattgcatggacttgtgttatgcagGCTGGCACCTAAAGTGGTGACTGTGGTGGAGCAGGACCTAAGCAACACTGGTTCATTCTTGGGGAGGTTTGTGGAAGCCATACACTACTACTCAGCATTA
ataatagtataaatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gatacttattaacatttgtcataaattcattttatacgaagaattatgattggataatagtataaatatgaaacttattgcatggacttgtgttatgcagGCTGGCACCTAAAGTGGTGACTGTGGTGGAGCAGGACCTAAGCAACACTGGTTCATTCTTGGGGAGGTTTGTGGAAGCCATACACTACTACTCAGCATTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatgga