1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tctgctatcttttgtaacatttcctggagttatgggttcaggatctatatcatctttctcatgtcattacattctgatggtactatcatttttttgtcagGGTCAAATGCTGACTTTAGTTGAATACCTCCTCCTGCTTTACCGTGCCTTGTTGCCAACACCAGTTTGGTATCGTTTCTTCCTGAACAAAGAATATGGAA
species | Glycine max |
transcript | GLYMA18G45010.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TATTGTTGATGTATTACAAGAATAGCAGAGGCCGAAATTATCGTAAGCAG GGTCAAATGCTGACTTTAGTTGAATACCTCCTCCTGCTTTACCGTGCCTTGEST: gi|193316041|gb|FK279755.1|FK279755
genomic: TATTGTTGATGTATTACAAGAATAGCAGAGGCCGAAATTATCGTAAGCAGgtgagttata ... tttttgtcagGGTCAAATGCTGACTTTAGTTGAATACCTCCTCCTGCTTTACCGTGCCTTG
EST: TATTGTTGATGTATTACAAGAATAGCAGAGGCCGAAATTATCGTAAGCAG GGTCAAATGCTGACTTTAGTTGAATACCTCCTCCTGCTTTACCGTGCCTTGEST: gi|15814325|gb|BI786600.1|BI786600
genomic: TATTGTTGATGTATTACAAGAATAGCAGAGGCCGAAATTATCGTAAGCAGgtgagttata ... tttttgtcagGGTCAAATGCTGACTTTAGTTGAATACCTCCTCCTGCTTTACCGTGCCTTG
EST: AGAATAGCAGAGGCCGAAATTATCGTAAGCAG GGTCAAATGCTGACTTTAGTTGAATACCTCCTCCTGCTTTACCGTGCCTTG
genomic: AGAATAGCAGAGGCCGAAATTATCGTAAGCAGgtgagttata ... tttttgtcagGGTCAAATGCTGACTTTAGTTGAATACCTCCTCCTGCTTTACCGTGCCTTG
tatatcatctttctcatgtcattacattctgatggtactatcatttttttgtcagGGTCAAATGCTGACTTTAGTTGAATACCTCCTCCTGCTTTACCGTGCCTTGTTGCCAACACCAGTTTGGTATCGTTTCTTCCTGAACAAAGAATATGGAA
ttctgat putative branch site (score: 3)
tcattttttt putative PPT
tactatcattttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctgctatcttttgtaacatttcctggagttatgggttcaggatctatatcatctttctcatgtcattacattctgatggtactatcatttttttgtcagGGTCAAATGCTGACTTTAGTTGAATACCTCCTCCTGCTTTACCGTGCCTTGTTGCCAACACCAGTTTGGTATCGTTTCTTCCTGAACAAAGAATATGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- tgctatc
- - - - - - - - - - -tcctgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctgatg