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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagattgtgacttccttttggtgggggactacttgttttactttgttttaacaatgttttacacacacacacacacatatttaataaaattgtattatgtacttgaatattctacttcagtgttgcactttgtatgtaacctaaatcatatctagattattaaataacttcattatctctgtggtatatagATTGGACGTATTGGGTCTGCATGAGTTTGATAGTGTGCGAAAAAGAATGTCTGTTGTTATTCGGTTTCCTGACAACGCGGTAAAGGTGTTAGTCAAAGGT

Basic information

species Glycine max
transcript GLYMA18G44550.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G44550.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G398288_T01 (Zea mays), 3'ss of exon 2
gtagattgtgacttccttttggtgggggactacttgttttactttgttttaacaatgttttacacacacacacacacatatttaataaaattgtattatgtacttgaatattctacttcagtgt-tgcactttgtatgta-acctaaatcatatctagattattaaataacttcattatctctgtggtatatagATTGGACGTATTGGGTCTGCATGAGTTTGATAGTGTGCGAAAAAGAATGTCTGTTGTTATTCGGTTTCCTGACAACGCGGTAAAGGTGTTAGTCAAAGGT
                                                | || | ||     |  | || | |  |  |  || | |||  ||||     | || | ||   |   | ||  |  | || |||| |  || |  |  |   | | ||  ||| | |  ||  | |    |  |||  ||   || ||||| ||  | ||||| ||||| || ||||||||| ||||||||||||||||| || |  ||||||| ||||||   || |||||  | || ||||||
-----------------------------------------------gtaaatactgcaaccctgaaaccctctgagttccttgacaaagctgtagccactgctggtat---cagttccaacgaattcattttgcacctatatttttagagtgtatat-ttacttaccaatctta----cattgtcataatcagGTTGGATGTTCTTGGTCTCCATGAATTCGATAGTGTGAGAAAAAGAATGTCTGTTATTGTAAGGTTTCCGGACAACAATGTGAAGGTTCTTGTGAAAGGT

upper sequence: GLYMA18G44550.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv08s0058g01400.t01 (Vitis vinifera), 3'ss of exon 2
gtagattgtgacttccttttggtgggggactacttgttttactttgttttaacaatgttttacacacacacacacacatatttaataaaattgtattatgtacttgaatattctacttcagtgttgcactttgtatgtaacctaaa-tcatatctagattattaaataacttcattatctct--gtggtatatagATTGGACGTATTGGGTCTGCATGAGTTTGATAGTGTGCGAAAAAGAATGTCTGTTGTTATTCGGTTTCCTGACAACGCGGTAAAGGTGTTAGTCAAAGGT
|||||   | || || |  |       |   | || |  ||| ||  |  ||| ||  ||       | |     || |  ||  |    | | |||   || ||| ||| |  |  | | | |  ||  |  |||||  | |||| |  | | |  | |  | ||| |||||||||| |||  |||  || |||  ||||  | ||||||||||||||||||||||| ||||| ||||||||||||||||| ||  | || ||  |  |  | || || || || || ||||||
gtaga--ataacctcttacttaatactgtgcatttttggtacatt-ctccaactatccttgttttttata-----acttggttgctgctctagaattgaatatttggataataaaaat-aatataccaaatgctatgttgcttaaagttgtgtattcaatgattaattacttcattatttctatgtgcaatttagGCTGGATCTGTTGGGTCTGCATGAGTTTGATAGCGTGCGCAAAAGAATGTCTGTTGTCATCAGATTCCCCAATGATACTGTGAAAGTCTTGGTGAAAGGT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taacctaaatcatatctagattattaaataacttcattatctctgtggtatatagATTGGACGTATTGGGTCTGCATGAGTTTGATAGTGTGCGAAAAAGAATGTCTGTTGTTATTCGGTTTCCTGACAACGCGGTAAAGGTGTTAGTCAAAGGT
                         aaataac  putative branch site (score: 2)
                                       tctctgt  putative PPT
     taaatcatatctagat  TA-rich tract