Sequence
atgc intronic sequence ATGC exonic sequence...gatatgggttccaattgagtataatgccctcatttacaatatcatgatgaaaatagcttcatgacattcttattctcattcttcatcatatcatgttcagAGTTATACACAGTATATTCCCTTACCTATCAGTGAACTTGATTCCTGGCTGAAGACCCCATCAATTTACGTCATTGATTGCTCTGCGGCTGGGATGATTG
Basic information
species | Glycine max |
transcript | GLYMA18G44210.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA18G44210.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G048067_T02 (Zea mays), 3'ss of exon 4
--gatatgggttccaattgagtataatgccctcatt-tacaatatcatgatga-aaatagcttcatgacattcttattctcattcttcatcatatcatgttcagAGTTATACACAGTATATTCCCTTACCTATCAGTGAACTTGATTCCTGGCTGAAGACCCCATCAATTTACGTCATTGATTGCTCTGCGGCTGGGATGATTG
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gtaaaattatgatgaagacactgtattgcttgctttgcatgccttacttatcataggtgtctctgataaattaaaatggtcgtttttttgcattttct-tgcagAGTTACACACAGTATATTCCACTTCCAATTACTGATCTTGATTCATGGCTGAAGACACCTTCAATTTACGTTTTTGATTGCTCAGCGTCTGGAATTATTG
upper sequence: GLYMA18G44210.1 (Glycine max), 3'ss of exon 4
lower sequence: AT3G08850.1 (Arabidopsis thaliana), 3'ss of exon 4
gatatgggttccaattgagtataatgccctcatttacaatatcatgatgaaaatagcttcatgacattcttattctcattcttcatcatatcatgttcagAGTTATACACAGTATATTCCCTTACCTATCAGTGAACTTGATTCCTGGCTGAAGACCCCATCAATTTACGTCATTGATTGCTCTGCGGCTGGGATGATTG
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-gtctgttttttactagcgttttcttttctctaccatgttcttgttccttctcgtctgttaccacgagctgattg--attctctgtt------tgagcagAGTTATACACAGTACATTCCCTTGCCAATCAGTGAACTTGATTCCTGGTTGAAGACACCCTCCATCTATGTTTTCGACTGCTCTGCTGCTAGGATGATTC
upper sequence: GLYMA18G44210.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv08s0058g00890.t01 (Vitis vinifera), 3'ss of exon 4
gatatgggttccaattgagtataatgccctcatttacaatatcatgatgaaaatagcttcatgacattcttattctcattcttcatcatatcatgttca-gAGTTATACACAGTATATTCCCTTACCTATCAGTGAACTTGATTCCTGGCTGAAGACCCCATCAATTTACGTCATTGATTGCTCTGCGGCTGGGATGATTG
| || | || || | | | | | || | ||| | | | | ||| || || ||||| | | | || | | ||| ||||| |||||||| ||||| || ||||| || || ||||||||| ||||||| || ||||| || || ||||||||||||| |||||||||||||
----------gtattttattactttgaagt--tctgccgtgctattttattgatatcgcctttagattttt-ctcctattctgactggtgtattggtgaagAGCTATACTCAGTATATCCCCTTGCCAATCAGCGACCTGGATTCCTGGTTGAAGACACCGTCAATATATGTTTTTGATTGCTCTGCTGCTGGGATGATTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gatgaaaatagcttcatgacattcttattctcattcttcatcatatcatgttcagAGTTATACACAGTATATTCCCTTACCTATCAGTGAACTTGATTCCTGGCTGAAGACCCCATCAATTTACGTCATTGATTGCTCTGCGGCTGGGATGATTG
attcttatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gatatgggttccaattgagtataatgccctcatttacaatatcatgatgaaaatagcttcatgacattcttattctcattcttcatcatatcatgttcagAGTTATACACAGTATATTCCCTTACCTATCAGTGAACTTGATTCCTGGCTGAAGACCCCATCAATTTACGTCATTGATTGCTCTGCGGCTGGGATGATTG
- - - - - - - - - - - - tgccctc
- - - - - - - - - - - - - - - - - - - - - catgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcatgac