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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtttttcaactatggtatcaaagttttagtagggatgtctacatttgcttgacatggtcatagattttccttttcagatgtatatacaaatagttttgatctcatgtgggtcatgatttctctggcaagtaccaaagctagaagctccttccttcagTATCAACTTCTTTAGCACTTGCTGCAACTCTTGGAATGGCTGAAACTGTGGTGCTTACGCTTGGCTCTGGCATTCTTATGAATATCATGGGTATACCTGC

Basic information

species Glycine max
transcript GLYMA18G43740.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G43740.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv08s0058g00510.t01 (Vitis vinifera), 3'ss of exon 3
gtatgtttt-tcaactatggtatcaaagtt-ttagtagggatgtctacatttgcttgacatggtcatagattttccttttcagatgtatatacaaatagttttgatctcatgtgggtcat---gatttctctggcaagtaccaaagctagaagctccttccttcagTATCAACTTCTTTAGCACTTGCTGCAACTCTTGGAATGGCTGAAACTGTGGTGCTTACGCTTGGCTCTGGCATTCTTATGAATATCATGGGTATACCTGC
|||  |||| | |  | |  |||   | ||  |  | |   | | | | |||  || ||    |  |  | ||  | ||    ||  || |   ||  |||||| |    ||   ||  |   |||             || | ||  ||| ||||||||||||||||||||||||||| |||||||||||     |||| || || ||| |||| |  ||  |                                          
gtactttttgtgagatttcttattctaattactttttgttgtattttcctttattttac---cttctgtacttctcattc---attgatctgataaaggttttggttctgtgactgtttttaagATCATGTAAATGGTCACAAGAGAAAGATGCTCCTTCCTTCAGTATCAACTTCTTTGGCACTTGCTGCTGGCATTGGCATTGCAGAAGCTGTTGCACTCTC------------------------------------------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catgtgggtcatgatttctctggcaagtaccaaagctagaagctccttccttcagTATCAACTTCTTTAGCACTTGCTGCAACTCTTGGAATGGCTGAAACTGTGGTGCTTACGCTTGGCTCTGGCATTCTTATGAATATCATGGGTATACCTGC
                                          ctccttccttc  CT-rich tract
          atgattt  TA-rich tract