1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...catacaaaatacacatgtatcacgagtacattttccatattcttgccatgatattcatcaacaaagagttaaagattaatatcatttgtgttaattcaggAATATGAAAACTTTTCACGTTATGTTTGTGAGGCTTATAAAGGCATTACGGCTCCAGCAGCATGCAACCTTCATTAGGAATTGATGAAGTCCAAATAAAC
species | Glycine max |
transcript | GLYMA18G43600.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CCACGAATTTCTGCCTTGGGTGATGGTAAACAATCAATCTATTGGAAAGG AATATGAAAACTTTTCACGTTATGTTTGTGAGGCTTATAAAGGCATTACG-EST: gi|208177447|gb|GD973956.1|GD973956
genomic: CCACGAATTTCTGCCTTGGGTGATGGTAAACAATCAATCTATTGGAAAGGtttgtttttt ... ttaattcaggAATATGAAAACTTTTCACGTTATGTTTGTGAGGCTTATAAAGGCATTACGG
EST: CCACGAATTTCTGCCTTGGGTGATGGTAAACAATCAATCTATTGGAAAGG AATATGAAAACTTTTCACGTTATGTTTGTGAGGCTTATAAAGGCATTACGG
genomic: CCACGAATTTCTGCCTTGGGTGATGGTAAACAATCAATCTATTGGAAAGGtttgtttttt ... ttaattcaggAATATGAAAACTTTTCACGTTATGTTTGTGAGGCTTATAAAGGCATTACGG
ccatgatattcatcaacaaagagttaaagattaatatcatttgtgttaattcaggAATATGAAAACTTTTCACGTTATGTTTGTGAGGCTTATAAAGGCATTACGGCTCCAGCAGCATGCAACCTTCATTAGGAATTGATGAAGTCCAAATAAAC
tgttaat putative branch site (score: 3)
ttaaagattaatatca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catacaaaatacacatgtatcacgagtacattttccatattcttgccatgatattcatcaacaaagagttaaagattaatatcatttgtgttaattcaggAATATGAAAACTTTTCACGTTATGTTTGTGAGGCTTATAAAGGCATTACGGCTCCAGCAGCATGCAACCTTCATTAGGAATTGATGAAGTCCAAATAAAC
catacaa
- - - - - - -catgtat
- - - - - - - - - - - - - - - - - - - - - - - - - - - -catcaac