1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...taaagtaattatctcaaacaagcacttttcaggctcaaatttcaacaattggtggttgttactaattaatcagtgttcaatgcatgtttatctttttaggTGCTGAGCAATGCAATATACAAGAGTGTAGAGCACAGGGTGATTGTGAACTCAAACAAAGATCGTGTGTCCTTGGCATTGTTCTATAACCCGAGAAGTGA
species | Glycine max |
transcript | GLYMA18G43140.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TAAGCCTGTCCCAAATGCATTCGTCATCAACATTGGTGACCAAATTCAGG TGCTGAGCAATGCAATATACAAGAGTGTAGAGCACAGGGTGATTGTGAACTEST: gi|10255344|gb|BE823110.1|BE823110
genomic: TAAGCCTGTCCCAAATGCATTCGTCATCAACATTGGTGACCAAATTCAGGtccagccctc ... tctttttaggTGCTGAGCAATGCAATATACAAGAGTGTAGAGCACAGGGTGATTGTGAACT
EST: TAAGCCTGTCCCAAATGCATTNNTCATCAACATTGGTGACCAAATTCAGG TGCTGAGCAATGCAATATACAAGAGTGTAGAGCACAGGGTGATTGTGAACTEST: gi|207734959|gb|GD709746.1|GD709746
genomic: TAAGCCTGTCCCAAATGCATTCGTCATCAACATTGGTGACCAAATTCAGGtccagccctc ... tctttttaggTGCTGAGCAATGCAATATACAAGAGTGTAGAGCACAGGGTGATTGTGAACT
EST: TAGGCCTGTCCCAAATGCATTCGTCATCAACATTGGTGACCAAATTCAGG TGCTGAGCAATGCAATATACAAGAGTGTAGAGCACAGGGTGATTGTGAACTEST: gi|7147478|gb|AW509400.1|AW509400
genomic: TAAGCCTGTCCCAAATGCATTCGTCATCAACATTGGTGACCAAATTCAGGtccagccctc ... tctttttaggTGCTGAGCAATGCAATATACAAGAGTGTAGAGCACAGGGTGATTGTGAACT
EST: TAAGCCTGTCCCAAATGCATTCGTCATCAACATTGGTGACCAAATTCAGG TGCTGAGCAATGCAATATACAAGAGTGTAGAGCACAGGGTGATTGTGAACTEST: gi|10255554|gb|BE823327.1|BE823327
genomic: TAAGCCTGTCCCAAATGCATTCGTCATCAACATTGGTGACCAAATTCAGGtccagccctc ... tctttttaggTGCTGAGCAATGCAATATACAAGAGTGTAGAGCACAGGGTGATTGTGAACT
EST: TAAGCCTGTCCCAAATGCATTCGTCATCAACATTGGTGACCAAATTCAGG TGCTGAGCAATGCAATATACAAGAGTGTAGAGCACAGGGTGATTGTGAACT
genomic: TAAGCCTGTCCCAAATGCATTCGTCATCAACATTGGTGACCAAATTCAGGtccagccctc ... tctttttaggTGCTGAGCAATGCAATATACAAGAGTGTAGAGCACAGGGTGATTGTGAACT
caattggtggttgttactaattaatcagtgttcaatgcatgtttatctttttaggTGCTGAGCAATGCAATATACAAGAGTGTAGAGCACAGGGTGATTGTGAACTCAAACAAAGATCGTGTGTCCTTGGCATTGTTCTATAACCCGAGAAGTGA
tttatcttttt CT-rich tract
ttgttactaattaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taaagtaattatctcaaacaagcacttttcaggctcaaatttcaacaattggtggttgttactaattaatcagtgttcaatgcatgtttatctttttaggTGCTGAGCAATGCAATATACAAGAGTGTAGAGCACAGGGTGATTGTGAACTCAAACAAAGATCGTGTGTCCTTGGCATTGTTCTATAACCCGAGAAGTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - caagcac
- - - - - - - - - - - - - - - - - - - - - - - - -tggtggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agtgttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatgtt