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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgtacaataaggaaagaatgtattggtatttctctatttatatctcataatattgaccggtcttttcatttgtgttagtgtttcttctttaatattccagGTGATCCGTGTTGTACCTTACAGTGCTGTCCAGCTTTTTGCTTATGAGATTTATAAG

Basic information

species Glycine max
transcript GLYMA18G42950.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G42950.1 (Glycine max), 3'ss of exon 4
lower sequence: AT3G51870.1 (Arabidopsis thaliana), 3'ss of exon 3
gtctgtacaataaggaaagaatgtattggtatttctctatttatatctcataatattgaccggtcttttcatttgtgttagtgtttcttctttaatatt---ccagGTGATCCGTGTTGTACCTTACAGTGCTGTCCAGCTTTTTGCTTATGAGATTTATAAG
                   |||   ||||  ||  | | ||||||||   | || | |    |||||  | | |  | || | | | ||    ||| |     ||||||||  | ||  ||||||||||||| ||||||||||| |||||||||| ||| |||
-----------------gtaattgtttggacttgttttttttatatcaagtgat-tggttttgtcttgacttattggataat-tctgtttgaaaatgtgacatcagGTGATAAGAGTGTTACCTTACAGTGCGGTCCAGCTTTTGGCTTATGAGAGTTACAAG

upper sequence: GLYMA18G42950.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv08s0007g02230.t01 (Vitis vinifera), 3'ss of exon 3
-------------------gtctgtacaataaggaaagaatgtatt----ggtatttctc--tatttatatctcataatattgaccggtcttttcatt--------tgtgtt--agtgtttcttctttaatattccagGTGATCCGTGTTGTACCTTACAGTGCTGTCCAGCTTTTTGCTTATGAGATTTATAAG
                    |||  |    | ||| |   | |  |      | ||||    ||| | | ||  | | | |||       | || |||        |||  |  ||  |||||| |    | ||||||||||| ||| |  ||||||||||||| |||||||| ||||||||||| | ||| |||
gtcctttgcatccttcactttctaaattgcatggataagcttttctcttcactgtttcagagtatctttttccaagattgttgggataattctttattgaattgaatgtacttaaggatttcttttgatttgttccagGTGATACGTATCATACCTTACAGTGCCGTCCAGCTGTTTGCTTATGAAACTTACAAG

upper sequence: GLYMA18G42950.1 (Glycine max), 3'ss of exon 4
lower sequence: PP1S52_69V6.1 (Physcomitrella patens), 3'ss of exon 5
gtctgtacaataaggaaagaatgtattggtatttctctatttatatctcataatattgaccggtcttttcatttgtgttag-tgtttcttctttaatat--------tccagGTGATCCGTGTTGTACCTTACAGTGCTGTCCAGCTTTTTGCTTATGAGATTTATAAG
            || |     | || |||     || | ||  ||   | |  |      | ||   | | | ||  | || | |  |   | | ||||        | |||||  |||||||  ||||||||||||| || || ||||||||||||||| |||| |||
------------agtaccttctctactggaccaactttcttggtaaaacgtctttcctgtcagttgctgcttctgaataagatctgaccattctgatatgggatatgtgcagGTTGTCCGTGTCATACCTTACAGTGCGGTGCAACTTTTTGCTTATGAGGTTTACAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cataatattgaccggtcttttcatttgtgttagtgtttcttctttaatattccagGTGATCCGTGTTGTACCTTACAGTGCTGTCCAGCTTTTTGCTTATGAGATTTATAAG
                                   tttcttcttta  CT-rich tract
                                   tttcttctttaatatt  TA-rich tract