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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgatctgcaattcctctatctccttatttgttaaattttggggatattatggatagtgtagtgtaactgtgtaaagacttatttgtgacacttcatatccaatgctggcttaatttcagGTTTTTGGAGCTCTTATCATTGCAAAACTTTTGTGTGTTCCTATTGTCATGTCCTATCATACCCATGTACCAGT

Basic information

species Glycine max
transcript GLYMA18G42540.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G42540.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv08s0007g01940.t01 (Vitis vinifera), 3'ss of exon 4
gttgatctgcaattcctctatctccttatttgtta-aattttggggatattatggatagtgtagtgtaactgtgtaaagacttatttgtgacacttca--tatccaatgctggcttaatttcagGTTTTTGGAGCTCTTATCATTGCAAAACTTTTGTGTGTTCCTATTGTCATGTCCTATCATACCCATGTACCAGT
                      | || ||||   | |||||||    | || |||  | |  |  | |      |||  | |    |||||    |    |  | | ||||| ||| |||  |||| ||||| |||||  | ||||||||||| |||||||||||||| || ||||| ||||| |||||||| |||||
----------------------ttctcatttaacataattttgtttttgttttgggaaatcaaaggaag--aactaatcattggcatgtgatgtatggattgacaattgctgactttattgtagGTCTTTGGTGCTCTCTTTATTGCAAAACTATTGTGTGTTCCTATAGTGATGTCTTATCACACCCATGTTCCAGT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120494796|gb|EH222963.1|EH222963
EST:     TAGCCCGGTTTAAGCCTGACATAATACATGCATCATCGCCAGGCATAATG                         GTTTTTGGAGCTCTTATCATTGCAAAACTTTTGTGTGTTCCTATTGTCATG
genomic: TAGCCCGGTTTAAGCCTGACATAATACATGCATCATCGCCAGGCATAATGgttgatctgc ... ttaatttcagGTTTTTGGAGCTCTTATCATTGCAAAACTTTTGTGTGTTCCTATTGTCATG
EST: gi|120491418|gb|EH219585.1|EH219585
EST:     TAGCCCGGTTTAAGCCTGACATAATACATGCATCATCGCCAGGCATAATG                         GTTTTTGGAGCTCTTATCAT
genomic: TAGCCCGGTTTAAGCCTGACATAATACATGCATCATCGCCAGGCATAATGgttgatctgc ... ttaatttcagGTTTTTGGAGCTCTTATCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aactgtgtaaagacttatttgtgacacttcatatccaatgctggcttaatttcagGTTTTTGGAGCTCTTATCATTGCAAAACTTTTGTGTGTTCCTATTGTCATGTCCTATCATACCCATGTACCAGT
                                             ttaatttca  TA-rich tract