Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggctattattttcttgtcttttttttttggtctccagtatgtgttacttgtttatgaatatctactgtgtattaatttgtttaatgatgccctatcaattctttctcttgtcctctcttctaatatgattcagTGAAGCAAAAGGTAGTTTTGTATTGACTGCCTCCCCTCATGGTGACTCTGTCGACAGTAGTGCTAGACCAGGGGTCCCTTCTCTTAGTGAACCAAATACT

Basic information

species Glycine max
transcript GLYMA18G36660.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G36660.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv07s0005g06680.t01 (Vitis vinifera), 3'ss of exon 3
gttggctattattttcttgtcttttttttttggtctccagtatgtgttacttgtttatgaatatctactgtgtattaatttgtttaatgatgccctatcaattctttctcttgtcctctcttctaatatgatt-cagTGAAGCAAAAGGTAGTTTTGTATTGACTGCCTCCCCTCATGGTGACTCTGTCGACAGTAGTGCTAGACCAGGGGTCCCTTCTCTTAGTGAACCAAATACT
                                             |||| |  ||  |  |||  | |    ||  || ||||     |||| |||    ||| ||| | |||  ||   |  |  | |  |  ||||||||||||||| |||||||  ||||||||||| |||||||| || ||||| || |||||||  ||||||||||  ||| |  || |||||||||||| |
---------------------------------------------gttattctttctt--atagatgcaaattaaaaaattgtg----gatgacctgc--attatttttattgaactagatgatgttcttgtaacagTGAAGCAAAAGGCAGTTTTGCGTTGACTGCCTCACCTCATGGCGATTCTGTTGAAAGTAGTGGCAGACCAGGGGGGCCTACAGTTTGTGAACCAAATAGT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttaatgatgccctatcaattctttctcttgtcctctcttctaatatgattcagTGAAGCAAAAGGTAGTTTTGTATTGACTGCCTCCCCTCATGGTGACTCTGTCGACAGTAGTGCTAGACCAGGGGTCCCTTCTCTTAGTGAACCAAATACT
                                       ttctaat  putative branch site (score: 2)
                    ttctttctcttgtcct  CT-rich tract
                                          taatatgatt  TA-rich tract